Command line: [exonerate -m p2g --showtargetgff -q Gpx3.fa.U_to_X -t gi|511782570|gb|CM001964.1|.fastasubseq]
Hostname: [luke]

C4 Alignment:
------------
         Query: SPP00001321_2.0 # Protein # Glutathione peroxidase 3 (GPx3) # Macaque (Macaca mulatta) 
        Target: gi|511782570|gb|CM001964.1|:subseq(53481652,202772) Chlorocebus sabaeus isolate 1994-021 chromosome 23, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 989
   Query range: 0 -> 190
  Target range: 99999 -> 102772

      1 : PheGlnMetAspCysHisGlyGlyValSerGlyThrIleTyrGluTyrGlyAlaLeuT :     20
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          PheGlnMetAspCysHisGlyGlyValSerGlyThrIleTyrGluTyrGlyAlaLeuT
 100000 : TTCCAGATGGACTGCCATGGTGGCGTGAGCGGCACCATTTACGAGTACGGAGCCCTCA : 100057

     21 : hrIleAspGlyGluGluTyrIleProPheLysGlnTyrIleGlyLysTyrValLeuPh :     39
          ||||||||||||||||||||||||||||||||||||||! !|||||||||||||||||
          hrIleAspGlyGluGluTyrIleProPheLysGlnTyrThrGlyLysTyrValLeuPh
 100058 : CCATTGATGGGGAGGAGTACATCCCCTTCAAGCAGTACACTGGCAAATACGTCCTCTT : 100114

     40 : eValAsnValAlaSerTyrUnkGlyLeuThrGlyGlnTyrIle{G}  >>>> Targe :     54
          |||||||||||||||||||   |||||||||||||||||||||{|}           1
          eValAsnValAlaSerTyr***GlyLeuThrGlyGlnTyrIle{G}++          
 100115 : TGTCAACGTGGCCAGCTACTGAGGCCTGACGGGCCAGTACATT{G}gt.......... : 100162

     55 : t Intron 1 >>>>  {lu}LeuAsnAlaLeuGlnGluGluLeuAlaProPheGlyL :     67
          405 bp           {||}|||||||||||||||||||||||||||||||||||||
                         ++{lu}LeuAsnAlaLeuGlnGluGluLeuAlaProPheGlyL
 100163 : ...............ag{AA}CTGAATGCACTACAAGAAGAGCTTGCACCATTTGGTC : 101603

     68 : euValLeuLeuGlyPheProCysAsnGlnPheGlyLysGlnGluProGlyGluAsnSe :     86
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          euValLeuLeuGlyPheProCysAsnGlnPheGlyLysGlnGluProGlyGluAsnSe
 101604 : TGGTCCTTCTCGGCTTTCCCTGCAACCAATTTGGAAAACAGGAACCAGGCGAGAACTC : 101660

     87 : rGluIleLeuProSerLeu{Ly}  >>>> Target Intron 2 >>>>  {s}Tyr :     94
          |||||||||||||||||||{||}            420 bp           {|}|||
          rGluIleLeuProSerLeu{Ly}++                         ++{s}Tyr
 101661 : AGAGATCCTTCCCAGCCTC{AA}gt.........................ag{G}TAT : 102104

     95 : ValArgProGlyGlyGlyPheValProAsnPheGlnLeuPheGluLysGlyAspValA :    114
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          ValArgProGlyGlyGlyPheValProAsnPheGlnLeuPheGluLysGlyAspValA
 102105 : GTCCGACCAGGTGGAGGCTTTGTCCCTAATTTCCAGCTCTTTGAGAAAGGGGATGTGA : 102164

    115 : snGlyGluLysGluGlnLysPheTyrThrPheLeuLys  >>>> Target Intron :    127
          ||||||||||||||||||||||||||||||||||||||            378 bp  
          snGlyGluLysGluGlnLysPheTyrThrPheLeuLys++                  
 102165 : ATGGAGAGAAAGAGCAGAAATTCTACACTTTCCTAAAGgt.................. : 102205

    128 :  3 >>>>  AsnSerCysProProThrSerGluLeuLeuGlyThrSerAspArgLeuP :    143
                   |||||||||||||||||||||||||||||||||||||||||||||||||
                 ++AsnSerCysProProThrSerGluLeuLeuGlyThrSerAspArgLeuP
 102206 : .......agAACTCCTGTCCTCCCACCTCGGAGCTCCTGGGTACATCTGACCGCCTCT : 102629

    144 : heTrpGluProMetLysValHisAspIleArgTrpAsnPheGluLysPheLeuValGl :    162
          ||||||||||||||||||||!!.|||||||||||||||||||||||||||||||||||
          heTrpGluProMetLysValGlnAspIleArgTrpAsnPheGluLysPheLeuValGl
 102630 : TCTGGGAACCCATGAAGGTCCAGGACATCCGCTGGAACTTTGAGAAGTTCCTGGTGGG : 102686

    163 : yProAspGlyIleProValMetArgTrpHisHisArgThrThrIleSerAsnValLys :    181
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          yProAspGlyIleProValMetArgTrpHisHisArgThrThrIleSerAsnValLys
 102687 : GCCAGATGGTATACCTGTCATGCGCTGGCACCACCGGACCACGATCAGCAATGTCAAG : 102743

    182 : MetAspIleLeuSerTyrMetArgArg :    190
          |||||||||||||||||||||||||||
          MetAspIleLeuSerTyrMetArgArg
 102744 : ATGGACATCCTGTCCTACATGAGGCGG : 102772

vulgar: SPP00001321_2.0 0 190 . gi|511782570|gb|CM001964.1|:subseq(53481652,202772) 99999 102772 + 989 M 53 159 S 0 1 5 0 2 I 0 1401 3 0 2 S 1 2 M 38 114 S 0 2 5 0 2 I 0 416 3 0 2 S 1 1 M 33 99 5 0 2 I 0 374 3 0 2 M 64 192
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2013-11-05
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|511782570|gb|CM001964.1|:subseq(53481652,202772)	exonerate:protein2genome:local	gene	100000	102772	989	+	.	gene_id 1 ; sequence SPP00001321_2.0 ; gene_orientation +
gi|511782570|gb|CM001964.1|:subseq(53481652,202772)	exonerate:protein2genome:local	cds	100000	100159	.	+	.	
gi|511782570|gb|CM001964.1|:subseq(53481652,202772)	exonerate:protein2genome:local	exon	100000	100159	.	+	.	insertions 0 ; deletions 0
gi|511782570|gb|CM001964.1|:subseq(53481652,202772)	exonerate:protein2genome:local	splice5	100160	100161	.	+	.	intron_id 1 ; splice_site "GT"
gi|511782570|gb|CM001964.1|:subseq(53481652,202772)	exonerate:protein2genome:local	intron	100160	101564	.	+	.	intron_id 1
gi|511782570|gb|CM001964.1|:subseq(53481652,202772)	exonerate:protein2genome:local	splice3	101563	101564	.	+	.	intron_id 0 ; splice_site "AG"
gi|511782570|gb|CM001964.1|:subseq(53481652,202772)	exonerate:protein2genome:local	cds	101565	101682	.	+	.	
gi|511782570|gb|CM001964.1|:subseq(53481652,202772)	exonerate:protein2genome:local	exon	101565	101682	.	+	.	insertions 0 ; deletions 0
gi|511782570|gb|CM001964.1|:subseq(53481652,202772)	exonerate:protein2genome:local	splice5	101683	101684	.	+	.	intron_id 2 ; splice_site "GT"
gi|511782570|gb|CM001964.1|:subseq(53481652,202772)	exonerate:protein2genome:local	intron	101683	102102	.	+	.	intron_id 2
gi|511782570|gb|CM001964.1|:subseq(53481652,202772)	exonerate:protein2genome:local	splice3	102101	102102	.	+	.	intron_id 1 ; splice_site "AG"
gi|511782570|gb|CM001964.1|:subseq(53481652,202772)	exonerate:protein2genome:local	cds	102103	102202	.	+	.	
gi|511782570|gb|CM001964.1|:subseq(53481652,202772)	exonerate:protein2genome:local	exon	102103	102202	.	+	.	insertions 0 ; deletions 0
gi|511782570|gb|CM001964.1|:subseq(53481652,202772)	exonerate:protein2genome:local	splice5	102203	102204	.	+	.	intron_id 3 ; splice_site "GT"
gi|511782570|gb|CM001964.1|:subseq(53481652,202772)	exonerate:protein2genome:local	intron	102203	102580	.	+	.	intron_id 3
gi|511782570|gb|CM001964.1|:subseq(53481652,202772)	exonerate:protein2genome:local	splice3	102579	102580	.	+	.	intron_id 2 ; splice_site "AG"
gi|511782570|gb|CM001964.1|:subseq(53481652,202772)	exonerate:protein2genome:local	cds	102581	102772	.	+	.	
gi|511782570|gb|CM001964.1|:subseq(53481652,202772)	exonerate:protein2genome:local	exon	102581	102772	.	+	.	insertions 0 ; deletions 0
gi|511782570|gb|CM001964.1|:subseq(53481652,202772)	exonerate:protein2genome:local	similarity	100000	102772	989	+	.	alignment_id 1 ; Query SPP00001321_2.0 ; Align 100000 1 159 ; Align 101567 55 114 ; Align 102104 94 99 ; Align 102581 127 192
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis