Command line: [exonerate -m p2g --showtargetgff -q gp2.fa.U_to_X -t gi|511782569|gb|CM001965.1|.fastasubseq]
Hostname: [luke]

C4 Alignment:
------------
         Query: SPP00000019_2.0 # Protein # Glutathione peroxidase 2 (GPx2) # Human (Homo sapiens) 
        Target: gi|511782569|gb|CM001965.1|:subseq(42101543,103232) Chlorocebus sabaeus isolate 1994-021 chromosome 24, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 1003
   Query range: 0 -> 190
  Target range: 53232 -> 49999

     1 : MetAlaPheIleAlaLysSerPheTyrAspLeuSerAlaIleSerLeuAspGlyGluLys :    20
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         MetAlaPheIleAlaLysSerPheTyrAspLeuSerAlaIleSerLeuAspGlyGluLys
 53232 : ATGGCTTTCATTGCCAAGTCCTTCTATGACCTCAGTGCCATCAGCCTGGATGGGGAGAAG : 53175

    21 : ValAspPheAsnThrPheArgGlyArgAlaValLeuIleGluAsnValAlaSerLeuUnk :    40
         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||   
         ValAspPheAsnThrPheArgGlyArgAlaValLeuIleGluAsnValAlaSerLeu***
 53174 : GTAGATTTCAATACGTTCCGGGGCAGGGCCGTGCTGATTGAGAATGTGGCTTCGCTCTGA : 53115

    41 : GlyThrThrThrArgAspPheThrGlnLeuAsnGluLeuGlnCysArgPheProArgArg :    60
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         GlyThrThrThrArgAspPheThrGlnLeuAsnGluLeuGlnCysArgPheProArgArg
 53114 : GGCACAACCACTCGGGACTTCACCCAGCTCAACGAGCTGCAATGCCGCTTTCCCAGGCGC : 53055

    61 : LeuValValLeuGlyPheProCysAsnGlnPheGlyHisGln  >>>> Target Intr :    75
         ||||||||||||||||||||||||||||||||||||||||||           2663 bp
         LeuValValLeuGlyPheProCysAsnGlnPheGlyHisGln++                
 53054 : CTGGTGGTCCTTGGCTTCCCTTGCAACCAATTTGGACATCAGgt................ : 53008

    76 : on 1 >>>>  GluAsnCysGlnAsnGluGluIleLeuAsnSerLeuLysTyrValArgP :    91
                    |||||||||||||||||||||||||||||||||||||||||||||||||
                  ++GluAsnCysGlnAsnGluGluIleLeuAsnSerLeuLysTyrValArgP
 53007 : .........agGAGAACTGTCAGAATGAGGAGATCCTGAACAGTCTCAAGTATGTCCGTC : 50299

    92 : roGlyGlyGlyTyrGlnProThrPheThrLeuValGlnLysCysGluValAsnGlyGlnA :   111
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         roGlyGlyGlyTyrGlnProThrPheThrLeuValGlnLysCysGluValAsnGlyGlnA
 50298 : CTGGGGGTGGATACCAGCCTACCTTCACCCTCGTCCAAAAATGTGAGGTGAATGGGCAGA : 50239

   112 : snGluHisProValPheAlaTyrLeuLysAspLysLeuProTyrProTyrAspAspProP :   131
         |||||||||||||||||||||||||||||||||||||||||||||||:!!||||||||||
         snGluHisProValPheAlaTyrLeuLysAspLysLeuProTyrProHisAspAspProP
 50238 : ATGAGCATCCTGTCTTCGCCTACCTGAAGGACAAGCTCCCCTACCCTCATGATGACCCAT : 50179

   132 : heSerLeuMetThrAspProLysLeuIleIleTrpSerProValArgArgSerAspValA :   151
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         heSerLeuMetThrAspProLysLeuIleIleTrpSerProValArgArgSerAspValA
 50178 : TTTCCCTCATGACCGATCCCAAGCTCATCATTTGGAGCCCCGTGCGCCGTTCAGATGTGG : 50119

   152 : laTrpAsnPheGluLysPheLeuIleGlyProGluGlyGluProPheArgArgTyrSerA :   171
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         laTrpAsnPheGluLysPheLeuIleGlyProGluGlyGluProPheArgArgTyrSerA
 50118 : CCTGGAACTTTGAGAAGTTCCTCATAGGGCCAGAGGGAGAGCCCTTCCGACGCTACAGCC : 50059

   172 : rgThrPheProThrIleAsnIleGluProAspIleLysArgLeuLeuLysValAlaIle :   190
         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         rgThrPheProThrIleAsnIleGluProAspIleLysArgLeuLeuLysValAlaIle
 50058 : GCACCTTCCCAACCATCAACATTGAGCCTGACATCAAGCGCCTCCTTAAAGTTGCCATA : 50000

vulgar: SPP00000019_2.0 0 190 . gi|511782569|gb|CM001965.1|:subseq(42101543,103232) 53232 49999 - 1003 M 74 222 5 0 2 I 0 2659 3 0 2 M 116 348
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2013-11-04
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|511782569|gb|CM001965.1|:subseq(42101543,103232)	exonerate:protein2genome:local	gene	50000	53232	1003	-	.	gene_id 1 ; sequence SPP00000019_2.0 ; gene_orientation +
gi|511782569|gb|CM001965.1|:subseq(42101543,103232)	exonerate:protein2genome:local	cds	53011	53232	.	-	.	
gi|511782569|gb|CM001965.1|:subseq(42101543,103232)	exonerate:protein2genome:local	exon	53011	53232	.	-	.	insertions 0 ; deletions 0
gi|511782569|gb|CM001965.1|:subseq(42101543,103232)	exonerate:protein2genome:local	splice5	53009	53010	.	-	.	intron_id 1 ; splice_site "GT"
gi|511782569|gb|CM001965.1|:subseq(42101543,103232)	exonerate:protein2genome:local	intron	50348	53010	.	-	.	intron_id 1
gi|511782569|gb|CM001965.1|:subseq(42101543,103232)	exonerate:protein2genome:local	splice3	50348	50349	.	-	.	intron_id 0 ; splice_site "AG"
gi|511782569|gb|CM001965.1|:subseq(42101543,103232)	exonerate:protein2genome:local	cds	50000	50347	.	-	.	
gi|511782569|gb|CM001965.1|:subseq(42101543,103232)	exonerate:protein2genome:local	exon	50000	50347	.	-	.	insertions 0 ; deletions 0
gi|511782569|gb|CM001965.1|:subseq(42101543,103232)	exonerate:protein2genome:local	similarity	50000	53232	1003	-	.	alignment_id 1 ; Query SPP00000019_2.0 ; Align 53233 1 222 ; Align 50348 75 348
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis