TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000019_2.0 # Protein # Glutathione peroxidase 2 (GPx2) #
Human (Homo sapiens)
         (190 letters)

Database: /cursos/BI/genomes/project_2014/Chlorocebus_sabaeus/genome.f
a 
           31 sequences; 2,744,115,311 total letters

Searching...............................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|511782569|gb|CM001965.1| Chlorocebus sabaeus isolate 1994-021...   246   6e-64
gi|511782571|gb|CM001963.1| Chlorocebus sabaeus isolate 1994-021...   173   5e-42
gi|511782573|gb|CM001961.1| Chlorocebus sabaeus isolate 1994-021...    60   7e-08
gi|511782576|gb|CM001958.1| Chlorocebus sabaeus isolate 1994-021...    59   2e-07
gi|511782589|gb|CM001944.1| Chlorocebus sabaeus isolate 1994-021...    50   4e-05
gi|511782570|gb|CM001964.1| Chlorocebus sabaeus isolate 1994-021...    49   2e-04
gi|511782587|gb|CM001946.1| Chlorocebus sabaeus isolate 1994-021...    43   0.007
gi|511782582|gb|CM001952.1| Chlorocebus sabaeus isolate 1994-021...    34   4.3  

>gi|511782569|gb|CM001965.1| Chlorocebus sabaeus isolate 1994-021 chromosome
                24, whole genome shotgun sequence
          Length = 84932903

 Score =  246 bits (627), Expect = 6e-64
 Identities = 115/116 (99%), Positives = 116/116 (100%)
 Frame = -3

Query: 75       ENCQNEEILNSLKYVRPGGGYQPTFTLVQKCEVNGQNEHPVFAYLKDKLPYPYDDPFSLM 134
                ENCQNEEILNSLKYVRPGGGYQPTFTLVQKCEVNGQNEHPVFAYLKDKLPYP+DDPFSLM
Sbjct: 42151890 ENCQNEEILNSLKYVRPGGGYQPTFTLVQKCEVNGQNEHPVFAYLKDKLPYPHDDPFSLM 42151711

Query: 135      TDPKLIIWSPVRRSDVAWNFEKFLIGPEGEPFRRYSRTFPTINIEPDIKRLLKVAI 190
                TDPKLIIWSPVRRSDVAWNFEKFLIGPEGEPFRRYSRTFPTINIEPDIKRLLKVAI
Sbjct: 42151710 TDPKLIIWSPVRRSDVAWNFEKFLIGPEGEPFRRYSRTFPTINIEPDIKRLLKVAI 42151543



 Score =  148 bits (374), Expect = 1e-34
 Identities = 73/74 (98%), Positives = 73/74 (98%)
 Frame = -1

Query: 1        MAFIAKSFYDLSAISLDGEKVDFNTFRGRAVLIENVASLXGTTTRDFTQLNELQCRFPRR 60
                MAFIAKSFYDLSAISLDGEKVDFNTFRGRAVLIENVASL GTTTRDFTQLNELQCRFPRR
Sbjct: 42154775 MAFIAKSFYDLSAISLDGEKVDFNTFRGRAVLIENVASL*GTTTRDFTQLNELQCRFPRR 42154596

Query: 61       LVVLGFPCNQFGHQ 74
                LVVLGFPCNQFGHQ
Sbjct: 42154595 LVVLGFPCNQFGHQ 42154554


>gi|511782571|gb|CM001963.1| Chlorocebus sabaeus isolate 1994-021 chromosome
                22, whole genome shotgun sequence
          Length = 101219884

 Score =  173 bits (438), Expect = 5e-42
 Identities = 79/112 (70%), Positives = 93/112 (83%)
 Frame = -1

Query: 75       ENCQNEEILNSLKYVRPGGGYQPTFTLVQKCEVNGQNEHPVFAYLKDKLPYPYDDPFSLM 134
                EN +NEEILNSLKYVRPGGG++P F L +KCEVNG   HP+FA+L++ LP P DD  +LM
Sbjct: 10755544 ENAKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREALPAPSDDATALM 10755365

Query: 135      TDPKLIIWSPVRRSDVAWNFEKFLIGPEGEPFRRYSRTFPTINIEPDIKRLL 186
                TDPKLI WSPV R+DVAWNFEKFL+GP+G P RRYSR F TI+IEPDI+ LL
Sbjct: 10755364 TDPKLITWSPVCRNDVAWNFEKFLVGPDGVPVRRYSRRFQTIDIEPDIEALL 10755209



 Score = 86.3 bits (212), Expect = 7e-16
 Identities = 48/76 (63%), Positives = 55/76 (72%), Gaps = 2/76 (2%)
 Frame = -1

Query: 1        MAFIAKSFYDLSAISL-DGEKVDFNTFRGRAVLIENVASLXGTTTRDFTQLNELQCRF-P 58
                +A  A+S Y  SA  L  GE V   + RG+ +LIENVASL GTT RD+TQ+NELQ R  P
Sbjct: 10756501 VAAAAQSVYAFSARPLAGGEPVSLGSLRGKVLLIENVASL*GTTVRDYTQMNELQRRLGP 10756322

Query: 59       RRLVVLGFPCNQFGHQ 74
                R LVVLGFPCNQFGHQ
Sbjct: 10756321 RGLVVLGFPCNQFGHQ 10756274


>gi|511782573|gb|CM001961.1| Chlorocebus sabaeus isolate 1994-021 chromosome
                20, whole genome shotgun sequence
          Length = 130588469

 Score = 59.7 bits (143), Expect = 7e-08
 Identities = 44/123 (35%), Positives = 58/123 (47%), Gaps = 3/123 (2%)
 Frame = -2

Query: 32       LIENVASLXGTTTRDFTQLNELQCRF-PRRLVVLGFPCNQFGHQENCQNEEILNSLKYVR 90
                L+ NVAS  G T + +  L +LQ    P    VL FPCNQFG QE   N+EI +  +   
Sbjct: 80337808 LVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAFPCNQFGQQEPDSNKEIESFARRT- 80337632

Query: 91       PGGGYQPTFTLVQKCEVNGQNEHPVFAYLKDKLPYPYDDPFSL--MTDPKLIIWSPVRRS 148
                    Y  +F +  K  V G   HP F YL  K        +SL  +T P L  W P ++ 
Sbjct: 80337631 ----YSVSFPMFSKIAVTGTGAHPAFKYLARK-------SWSLHPLTPPWLRPWLPGQQK 80337485

Query: 149      DVA 151
                 +A
Sbjct: 80337484 PLA 80337476


>gi|511782576|gb|CM001958.1| Chlorocebus sabaeus isolate 1994-021 chromosome
                17, whole genome shotgun sequence
          Length = 71996105

 Score = 58.5 bits (140), Expect = 2e-07
 Identities = 37/109 (33%), Positives = 54/109 (49%), Gaps = 7/109 (6%)
 Frame = +3

Query: 86       LKYVRPGGGYQPTFTLVQKCEVNGQN--EHP-----VFAYLKDKLPYPYDDPFSLMTDPK 138
                LKY+  GGG  P           G+N  +HP     +F +    L +    P  ++   K
Sbjct: 44080077 LKYLGIGGGGLPV----------GKNSLDHPGAEIILFLFSISLL*HSCPHPSEILGTFK 44080226

Query: 139      LIIWSPVRRSDVAWNFEKFLIGPEGEPFRRYSRTFPTINIEPDIKRLLK 187
                 I W+PV+  D+ WNFEKFL+GP+G P  R+S      +++ DI   LK
Sbjct: 44080227 SISWNPVKVHDIRWNFEKFLVGPDGIPVMRWSHQATVSSVKTDILAYLK 44080373



 Score = 52.4 bits (124), Expect = 1e-05
 Identities = 21/55 (38%), Positives = 31/55 (56%)
 Frame = -1

Query: 133      LMTDPKLIIWSPVRRSDVAWNFEKFLIGPEGEPFRRYSRTFPTINIEPDIKRLLK 187
                L+     + W P++  D+ WNFEKFL+GP+G P  R+    P   ++ DI   LK
Sbjct: 44051774 LLGSSSQLFWEPMKVHDIRWNFEKFLVGPDGVPVMRWFHRAPVSTVKSDILEYLK 44051610



 Score = 48.5 bits (114), Expect = 2e-04
 Identities = 20/39 (51%), Positives = 28/39 (71%)
 Frame = +3

Query: 82       ILNSLKYVRPGGGYQPTFTLVQKCEVNGQNEHPVFAYLK 120
                I+   +YVRPGGG+ P F L +K +VNG+ E  VF++LK
Sbjct: 44078523 IMTCCRYVRPGGGFVPNFQLFEKGDVNGEKEQKVFSFLK 44078639



 Score = 46.6 bits (109), Expect = 6e-04
 Identities = 31/60 (51%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
 Frame = +1

Query: 49       QLNELQCRF-PRRLVVLGFPCNQFGHQENCQNEEILNSLKYV---RPGGGYQPTFTLVQK 104
                +LN LQ    P  LVVLGFPCNQFG QE   N+EIL  LK V    P GG    F  +Q+
Sbjct: 44077999 ELNALQEELKPYGLVVLGFPCNQFGKQEPGDNKEILPGLK*VSSLNPIGGACVPFLSLQR 44078178



 Score = 44.3 bits (103), Expect = 0.003
 Identities = 18/34 (52%), Positives = 24/34 (70%)
 Frame = -3

Query: 87       KYVRPGGGYQPTFTLVQKCEVNGQNEHPVFAYLK 120
                +YVRPG G+ P F L +K +VNG+ E  VF +LK
Sbjct: 44053107 RYVRPGSGFVPNFQLFEKGDVNGEKEQKVFTFLK 44053006



 Score = 40.0 bits (92), Expect = 0.060
 Identities = 23/41 (56%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = -3

Query: 48       TQLNELQCRFPR-RLVVLGFPCNQFGHQENCQNEEILNSLK 87
                T+LN LQ       +VVL FPCNQFG QE   N EIL  LK
Sbjct: 44053722 TELNALQEELKNFGVVVLAFPCNQFGKQEPGTNSEILLGLK 44053600


>gi|511782589|gb|CM001944.1| Chlorocebus sabaeus isolate 1994-021 chromosome
                4, whole genome shotgun sequence
          Length = 91010382

 Score = 50.4 bits (119), Expect = 4e-05
 Identities = 32/92 (34%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
 Frame = +1

Query: 32       LIENVASLXGTTTRDFTQLNELQCRF-PRRLVVLGFPCNQFGHQENCQNEEILNSLKYVR 90
                L+ NVAS    T R++  L EL   F P    VL FPCNQFG  E   ++E+ +  +   
Sbjct: 51394300 LVVNVASDCQLTDRNYLALKELHKEFGPSHFSVLAFPCNQFGESEPRPSKEVESFAR--- 51394470

Query: 91       PGGGYQPTFTLVQKCEVNGQNEHPVFAYLKDK 122
                    Y  TF +  K ++ G    P F +L  K
Sbjct: 51394471 --KNYGVTFPIFHKIKILGSEGEPAFRFLVGK 51394560



 Score = 33.1 bits (74), Expect = 7.3
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +1

Query: 147      RSDVAWNFEKFLIGPEGEPFRRYSRTFPTINIEPDIKRLLKVAI 190
                + +  WNF K+L+ PEG+  + +    P   I PDI  L++  I
Sbjct: 51397378 KKEPRWNFWKYLVNPEGQVVKFWRPEEPIEVIRPDIAALVRQLI 51397509


>gi|511782570|gb|CM001964.1| Chlorocebus sabaeus isolate 1994-021 chromosome
                23, whole genome shotgun sequence
          Length = 82825804

 Score = 48.5 bits (114), Expect = 2e-04
 Identities = 18/43 (41%), Positives = 27/43 (62%)
 Frame = +3

Query: 140      IIWSPVRRSDVAWNFEKFLIGPEGEPFRRYSRTFPTINIEPDI 182
                + W P++  D+ WNFEKFL+GP+G P  R+       N++ DI
Sbjct: 53584278 LFWEPMKVQDIRWNFEKFLVGPDGIPVMRWHHRTTISNVKMDI 53584406



 Score = 45.4 bits (106), Expect = 0.001
 Identities = 25/40 (62%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
 Frame = +3

Query: 49       QLNELQCRF-PRRLVVLGFPCNQFGHQENCQNEEILNSLK 87
                +LN LQ    P  LV+LGFPCNQFG QE  +N EIL SLK
Sbjct: 53583216 ELNALQEELAPFGLVLLGFPCNQFGKQEPGENSEILPSLK 53583335



 Score = 43.5 bits (101), Expect = 0.005
 Identities = 17/34 (50%), Positives = 24/34 (70%)
 Frame = +3

Query: 87       KYVRPGGGYQPTFTLVQKCEVNGQNEHPVFAYLK 120
                +YVRPGGG+ P F L +K +VNG+ E   + +LK
Sbjct: 53583753 RYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLK 53583854


>gi|511782587|gb|CM001946.1| Chlorocebus sabaeus isolate 1994-021
              chromosome 6, whole genome shotgun sequence
          Length = 50890351

 Score = 43.1 bits (100), Expect = 0.007
 Identities = 23/49 (46%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
 Frame = +1

Query: 27     RGRAVLIENVASLXGTTTRDFTQLNELQCRFPR-RLVVLGFPCNQFGHQ 74
              RG   ++ NVAS  G T  ++TQL +L  R+    L +L FPCNQFG Q
Sbjct: 874942 RGFVCIVTNVASQ*GKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQ 875088


>gi|511782582|gb|CM001952.1| Chlorocebus sabaeus isolate 1994-021 chromosome
                11, whole genome shotgun sequence
          Length = 128539186

 Score = 33.9 bits (76), Expect = 4.3
 Identities = 21/68 (30%), Positives = 31/68 (45%)
 Frame = -3

Query: 92       GGGYQPTFTLVQKCEVNGQNEHPVFAYLKDKLPYPYDDPFSLMTDPKLIIWSPVRRSDVA 151
                G G +   +  Q+   NG    P              + F  M DP L+++S +R  DV 
Sbjct: 38270546 GAG*KTVISSTQRTSANGHTLLP-------------HNQFVFMKDP-LVLFSGLR*EDVI 38270409

Query: 152      WNFEKFLI 159
                WNFEKF++
Sbjct: 38270408 WNFEKFVV 38270385


  Database: /cursos/BI/genomes/project_2014/Chlorocebus_sabaeus/genome
  .fa
    Posted date:  Oct 18, 2013  5:58 PM
  Number of letters in database: 2,744,115,311
  Number of sequences in database:  31
  
Lambda     K      H
   0.323    0.141    0.439 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 616,091,937
Number of Sequences: 31
Number of extensions: 9761850
Number of successful extensions: 27080
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 26793
Number of HSP's gapped (non-prelim): 3206
length of query: 190
length of database: 914,705,103
effective HSP length: 123
effective length of query: 67
effective length of database: 914,701,290
effective search space: 61284986430
effective search space used: 61284986430
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 73 (32.7 bits)