_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 2e-66
 Query name: gi|226531023|ref|NP_001152770.1| glutathione peroxidase 1 [Macaca mulatta]
 Query range: 1-198  (total 198)

 Target: /var/www/seblastian_output/945371574/tempfiles/temptarget.fasta
 Chromosome: gi|511782571|gb|CM001963.1|subseq(10705188,101298) Strand: -
 Positions:
 -Exon 1  51086        51331
 -Exon 2  50000        50356

 Redox box: no

Query   MCAARLAAAA---VYAFSARPLAGGEPVSLGSLRGKVLLIENVASLUGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQ <---Intron---> EN
        |||||| |||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| <   729bp    > ||
Target  MCAARLVAAAAQSVYAFSARPLAGGEPVSLGSLRGKVLLIENVASLUGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQ                EN
        atggccgggggctgtgttgcccggggcgacgtccgagccagaggtctgaagcgtacaagcccccgccgcggcgtctactgcc                ga
        tgccgttccccactactccgctcggactgtgctggattttaatcctggcctgaacataataggtgcggttttgtcgaatgaa                aa
        gtttgaggagcgggcccggcggccggtgcgccggcggatcgtggccaccgcgcccggcggggctgcgcgggcccgccgtgtg                gc
                                                      *                                                     

Query   AKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPVRRYSRRFQTI
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Target  AKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPVRRYSRRFQTI
        gaaggacatcatgccgggtgcatactgatggaggggccctgttcggccgcagggagcaagcacaattcgtcagggtatgatcggcgggcgcatacctcaa
        caaaattactaatgcgggtacattttaagatagcgcacttcttgactcccgaacccttcacattcgcctggaatcgataatttgcagtctggagggtact
        cgcagtgtccgccatttgcgcccgccggcggctgggctccccgggcgacccctctgcgcccgcccgaggcccttcgccggcggcgctgcacgcccccgct
                                                                                                            

Query   DIEPDIEALLSQGPSSA
        |||||||||||||||||
Target  DIEPDIEALLSQGPSSA
        gagcgaggcctcgcaag
        atacatacttcagcggc
        ccgtccacggtatcctc
                         
 Sequence until next stop: 
TAG
 * 

 Distance CDS-SECIS: 53 ; UGA-SECIS: 515

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = gi|511782571|gb|CM001963.1|subseq(10705188,101298) Strand = - Positions = 49946 - 49879
 Found by:  Infernal (score=34.1) Covels (score=26.45)
 Stem2 length = 11   Apical loop length = 10   Insertion in stem2 = 1, 0
 Free Energy = -18.4

         ..(((((((.......((((((((((.(((((...............)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccug-gcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ..((((((.---....{[[(((((((.(((((........-----..))))))))))))]]}..--..-..))))))..
 target  GGGUUUUCA---UCUAUGAGGGUGUUUCCUCUAAACCUAC-----AAGGAGGAACACCUGAUAA--UA-CAGAAAAUAC
                         ****            ^^^                       ****