Command line: [exonerate -m p2g --showtargetgff -q gp1.fa.U_to_X -t gi|511782571|gb|CM001963.1|.fastasubseq]
Hostname: [luke]

C4 Alignment:
------------
         Query: SPP00000017_2.0 # Protein # Glutathione peroxidase 1 (GPx1) # Human (Homo sapiens) 
        Target: gi|511782571|gb|CM001963.1|:subseq(10705188,101298) Chlorocebus sabaeus isolate 1994-021 chromosome 22, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 996
   Query range: 0 -> 203
  Target range: 51331 -> 49999

     1 : MetCysAlaAlaArgLeuAlaAlaAlaAlaAlaAlaAlaGlnSerValTyrAlaPheSer :    20
         ||||||||||||||||||      !.!|||||||||||||||||||||||||||||||||
         MetCysAlaAlaArgLeu------ValAlaAlaAlaAlaGlnSerValTyrAlaPheSer
 51331 : ATGTGTGCTGCTCGGCTA------GTGGCGGCAGCGGCCCAGTCGGTGTACGCCTTCTCG : 51280

    21 : AlaArgProLeuAlaGlyGlyGluProValSerLeuGlySerLeuArgGlyLysValLeu :    40
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         AlaArgProLeuAlaGlyGlyGluProValSerLeuGlySerLeuArgGlyLysValLeu
 51279 : GCGCGCCCGCTGGCCGGCGGGGAGCCTGTGAGCCTGGGCTCCCTGCGGGGCAAGGTGCTA : 51220

    41 : LeuIleGluAsnValAlaSerLeuUnkGlyThrThrValArgAspTyrThrGlnMetAsn :    60
         ||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||
         LeuIleGluAsnValAlaSerLeu***GlyThrThrValArgAspTyrThrGlnMetAsn
 51219 : CTTATCGAGAATGTGGCGTCCCTCTGAGGCACCACGGTCCGGGACTACACCCAGATGAAC : 51160

    61 : GluLeuGlnArgArgLeuGlyProArgGlyLeuValValLeuGlyPheProCysAsnGln :    80
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         GluLeuGlnArgArgLeuGlyProArgGlyLeuValValLeuGlyPheProCysAsnGln
 51159 : GAGCTGCAGCGGCGCCTTGGGCCCCGGGGCCTGGTGGTGCTCGGCTTCCCGTGCAACCAG : 51100

    81 : PheGlyHisGln  >>>> Target Intron 1 >>>>  GluAsnAlaLysAsnGluG :    91
         ||||||||||||            729 bp           |||||||||||||||||||
         PheGlyHisGln++                         ++GluAsnAlaLysAsnGluG
 51099 : TTTGGGCATCAGgt.........................agGAGAACGCCAAGAACGAAG : 50338

    92 : luIleLeuAsnSerLeuLysTyrValArgProGlyGlyGlyPheGluProAsnPheMetL :   111
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         luIleLeuAsnSerLeuLysTyrValArgProGlyGlyGlyPheGluProAsnPheMetL
 50337 : AGATTCTGAATTCCCTCAAGTACGTCCGACCTGGTGGTGGGTTCGAGCCCAACTTCATGC : 50278

   112 : euPheGluLysCysGluValAsnGlyAlaGlyAlaHisProLeuPheAlaPheLeuArgG :   131
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         euPheGluLysCysGluValAsnGlyAlaGlyAlaHisProLeuPheAlaPheLeuArgG
 50277 : TCTTCGAGAAGTGCGAGGTGAACGGTGCGGGGGCGCACCCTCTCTTCGCCTTCTTGCGGG : 50218

   132 : luAlaLeuProAlaProSerAspAspAlaThrAlaLeuMetThrAspProLysLeuIleT :   151
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         luAlaLeuProAlaProSerAspAspAlaThrAlaLeuMetThrAspProLysLeuIleT
 50217 : AGGCCCTGCCAGCCCCCAGCGACGATGCCACTGCGCTCATGACCGACCCCAAGCTCATCA : 50158

   152 : hrTrpSerProValCysArgAsnAspValAlaTrpAsnPheGluLysPheLeuValGlyP :   171
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         hrTrpSerProValCysArgAsnAspValAlaTrpAsnPheGluLysPheLeuValGlyP
 50157 : CCTGGTCACCGGTGTGCCGCAACGATGTTGCCTGGAACTTCGAGAAGTTCCTGGTGGGCC : 50098

   172 : roAspGlyValProLeuArgArgTyrSerArgArgPheGlnThrIleAspIleGluProA :   191
         ||||||||||||||:!!|||||||||||||||||||||||||||||||||||||||||||
         roAspGlyValProValArgArgTyrSerArgArgPheGlnThrIleAspIleGluProA
 50097 : CGGACGGTGTGCCCGTACGCAGGTACAGCCGCCGCTTCCAGACCATTGACATCGAGCCTG : 50038

   192 : spIleGluAlaLeuLeuSerGlnGlyProSerCysAla :   203
         |||||||||||||||||||||||||||||||| !!|||
         spIleGluAlaLeuLeuSerGlnGlyProSerSerAla
 50037 : ACATCGAAGCCCTGCTGTCTCAAGGTCCCAGCAGTGCC : 50000

vulgar: SPP00000017_2.0 0 203 . gi|511782571|gb|CM001963.1|:subseq(10705188,101298) 51331 49999 - 996 M 6 18 G 2 0 M 76 228 5 0 2 I 0 725 3 0 2 M 119 357
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2013-11-04
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|511782571|gb|CM001963.1|:subseq(10705188,101298)	exonerate:protein2genome:local	gene	50000	51331	996	-	.	gene_id 1 ; sequence SPP00000017_2.0 ; gene_orientation +
gi|511782571|gb|CM001963.1|:subseq(10705188,101298)	exonerate:protein2genome:local	cds	51086	51331	.	-	.	
gi|511782571|gb|CM001963.1|:subseq(10705188,101298)	exonerate:protein2genome:local	exon	51086	51331	.	-	.	insertions 0 ; deletions 2
gi|511782571|gb|CM001963.1|:subseq(10705188,101298)	exonerate:protein2genome:local	splice5	51084	51085	.	-	.	intron_id 1 ; splice_site "GT"
gi|511782571|gb|CM001963.1|:subseq(10705188,101298)	exonerate:protein2genome:local	intron	50357	51085	.	-	.	intron_id 1
gi|511782571|gb|CM001963.1|:subseq(10705188,101298)	exonerate:protein2genome:local	splice3	50357	50358	.	-	.	intron_id 0 ; splice_site "AG"
gi|511782571|gb|CM001963.1|:subseq(10705188,101298)	exonerate:protein2genome:local	cds	50000	50356	.	-	.	
gi|511782571|gb|CM001963.1|:subseq(10705188,101298)	exonerate:protein2genome:local	exon	50000	50356	.	-	.	insertions 0 ; deletions 0
gi|511782571|gb|CM001963.1|:subseq(10705188,101298)	exonerate:protein2genome:local	similarity	50000	51331	996	-	.	alignment_id 1 ; Query SPP00000017_2.0 ; Align 51332 1 18 ; Align 51314 9 228 ; Align 50357 85 357
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis