Command line: [exonerate -m p2g --showtargetgff -q DI3.aa.fa.U_to_X -t gi|511782569|gb|CM001965.1|.fastasubseq]
Hostname: [luke]

C4 Alignment:
------------
         Query: SPP00000016_2.0 # Protein # Iodothyronine deiodinase 3 (DI3) # Human (Homo sapiens) 
        Target: gi|511782569|gb|CM001965.1|:subseq(79438464,200797) Chlorocebus sabaeus isolate 1994-021 chromosome 24, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 1463
   Query range: 0 -> 278
  Target range: 99963 -> 100797

      1 : MetLeuArgSerLeuLeuLeuHisSerLeuArgLeuCysAlaGlnThrAlaSerCysL :     20
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          MetLeuArgSerLeuLeuLeuHisSerLeuArgLeuCysAlaGlnThrAlaSerCysL
  99964 : ATGCTCCGCTCCCTGCTGCTTCACTCCTTGAGGCTCTGCGCCCAGACCGCCTCGTGCC : 100021

     21 : euValLeuPheProArgPheLeuGlyThrAlaPheMetLeuTrpLeuLeuAspPheLe :     39
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          euValLeuPheProArgPheLeuGlyThrAlaPheMetLeuTrpLeuLeuAspPheLe
 100022 : TCGTGCTCTTCCCGCGCTTCCTCGGCACGGCCTTCATGCTCTGGCTCCTCGATTTCTT : 100078

     40 : uCysIleArgLysHisPheLeuGlyArgArgArgArgGlyGlnProGluProGluVal :     58
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          uCysIleArgLysHisPheLeuGlyArgArgArgArgGlyGlnProGluProGluVal
 100079 : GTGTATCCGCAAGCATTTCCTGGGCCGCCGCCGCCGGGGGCAGCCCGAGCCCGAAGTG : 100135

     59 : GluLeuAsnSerGluGlyGluGluValProProAspAspProProIleCysValSerA :     78
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          GluLeuAsnSerGluGlyGluGluValProProAspAspProProIleCysValSerA
 100136 : GAGCTCAACAGTGAAGGCGAGGAGGTGCCCCCCGATGACCCGCCCATCTGCGTGTCCG : 100195

     79 : spAspAsnArgLeuCysThrLeuAlaSerLeuLysAlaValTrpHisGlyGlnLysLe :     97
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          spAspAsnArgLeuCysThrLeuAlaSerLeuLysAlaValTrpHisGlyGlnLysLe
 100196 : ACGACAACCGCCTGTGCACCCTGGCGTCGCTCAAGGCGGTGTGGCATGGCCAGAAGTT : 100252

     98 : uAspPhePheLysGlnAlaHisGluGlyGlyProAlaProAsnSerGluValValLeu :    116
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          uAspPhePheLysGlnAlaHisGluGlyGlyProAlaProAsnSerGluValValLeu
 100253 : GGATTTCTTCAAGCAGGCTCACGAGGGCGGTCCGGCGCCCAACTCGGAGGTGGTTCTG : 100309

    117 : ProAspGlyPheGlnSerGlnHisIleLeuAspTyrAlaGlnGlyAsnArgProLeuV :    136
          |||||||||||||||||||||!.!||||||||||||||||||||||||||||||||||
          ProAspGlyPheGlnSerGlnArgIleLeuAspTyrAlaGlnGlyAsnArgProLeuV
 100310 : CCCGACGGCTTCCAGAGCCAGCGCATCCTCGACTACGCGCAAGGGAACCGCCCGCTGG : 100369

    137 : alLeuAsnPheGlySerCysThrUnkProProPheMetAlaArgMetSerAlaPheGl :    155
          |||||||||||||||||||||||   ||||||||||||||||||||||||||||||||
          alLeuAsnPheGlySerCysThr***ProProPheMetAlaArgMetSerAlaPheGl
 100370 : TTCTCAATTTCGGCAGCTGCACCTGACCACCGTTCATGGCGCGCATGAGCGCCTTCCA : 100426

    156 : nArgLeuValThrLysTyrGlnArgAspValAspPheLeuIleIleTyrIleGluGlu :    174
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          nArgLeuValThrLysTyrGlnArgAspValAspPheLeuIleIleTyrIleGluGlu
 100427 : GCGCCTGGTCACCAAGTACCAGCGCGACGTCGACTTCCTCATCATCTACATCGAGGAA : 100483

    175 : AlaHisProSerAspGlyTrpValThrThrAspSerProTyrIleIleProGlnHisA :    194
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          AlaHisProSerAspGlyTrpValThrThrAspSerProTyrIleIleProGlnHisA
 100484 : GCGCACCCCTCCGACGGCTGGGTCACCACTGACTCCCCCTACATCATCCCGCAACACC : 100543

    195 : rgSerLeuGluAspArgValSerAlaAlaArgValLeuGlnGlnGlyAlaProGlyCy :    213
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          rgSerLeuGluAspArgValSerAlaAlaArgValLeuGlnGlnGlyAlaProGlyCy
 100544 : GGAGCCTGGAAGACCGGGTCAGCGCAGCTAGGGTACTGCAGCAAGGCGCGCCCGGCTG : 100600

    214 : sAlaLeuValLeuAspThrMetAlaAsnSerSerSerSerAlaTyrGlyAlaTyrPhe :    232
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          sAlaLeuValLeuAspThrMetAlaAsnSerSerSerSerAlaTyrGlyAlaTyrPhe
 100601 : CGCTCTGGTCCTCGACACCATGGCCAACTCCAGCAGCTCGGCCTATGGCGCCTACTTC : 100657

    233 : GluArgLeuTyrValIleGlnSerGlyThrIleMetTyrGlnGlyGlyArgGlyProA :    252
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          GluArgLeuTyrValIleGlnSerGlyThrIleMetTyrGlnGlyGlyArgGlyProA
 100658 : GAGCGTCTCTATGTCATCCAGAGTGGCACTATTATGTACCAAGGTGGCCGTGGCCCCG : 100717

    253 : spGlyTyrGlnValSerGluLeuArgThrTrpLeuGluArgTyrAspGluGlnLeuHi :    271
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          spGlyTyrGlnValSerGluLeuArgThrTrpLeuGluArgTyrAspGluGlnLeuHi
 100718 : ACGGCTACCAGGTCTCTGAGCTGCGCACTTGGTTGGAACGCTATGATGAGCAACTGCA : 100774

    272 : sGlyAlaArgProArgArgVal :    278
          ||||||||||||||||||||||
          sGlyAlaArgProArgArgVal
 100775 : TGGCGCTCGGCCCCGGAGGGTC : 100797

vulgar: SPP00000016_2.0 0 278 . gi|511782569|gb|CM001965.1|:subseq(79438464,200797) 99963 100797 + 1463 M 278 834
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2013-11-21
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|511782569|gb|CM001965.1|:subseq(79438464,200797)	exonerate:protein2genome:local	gene	99964	100797	1463	+	.	gene_id 1 ; sequence SPP00000016_2.0 ; gene_orientation .
gi|511782569|gb|CM001965.1|:subseq(79438464,200797)	exonerate:protein2genome:local	cds	99964	100797	.	+	.	
gi|511782569|gb|CM001965.1|:subseq(79438464,200797)	exonerate:protein2genome:local	exon	99964	100797	.	+	.	insertions 0 ; deletions 0
gi|511782569|gb|CM001965.1|:subseq(79438464,200797)	exonerate:protein2genome:local	similarity	99964	100797	1463	+	.	alignment_id 1 ; Query SPP00000016_2.0 ; Align 99964 1 834
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis