Output_id:  DI.3.selenocysteine
----------  -------------------
-Species        Chlorocebus sabaeus                          -Taxid 60711
-Target         /home/U73970/luke/Selenoprofiles/selenoprofiles_3_installation/genome_linked/genome.fa
-Chromosome (-) gi|511782569|gb|CM001965.1|
-Program        genewise
-Query name     gi|156547239|ref|NP_989445.2| deiodinase, iodothyronine, type II [Gallus gallus]
-Query range    1-264      length:264   coverage: 1.0
-Profile range  1-464      length:486   coverage: 0.95    sec_position: [257]
-ASI:           0.3286     (ignoring gaps: 0.4325)
-AWSIc:         0.6936     Z-score: 0.839
-AWSIw:         0.696     Z-score: 0.675
-State          kept

------- alignment -------
Query   MGLLSVDLLITLQILPVFFSNCLFLALYDSVILLKHMVLFLSRSKSARGEWRRMLTSEGLRCVWNSFLLDAYKQ <---Intron---> VKLGGEAPNS
        ||/|||||||||||||||||||||||||||||||||/|| |||||| ||||||||||||||||| ||||||||| <   7967nt   > |||| /||||
Target  MGILSVDLLITLQILPVFFSNCLFLALYDSVILLKHVVLLLSRSKSTRGEWRRMLTSEGLRCVWKSFLLDAYKQ                VKLGEDAPNS
        agacaggtcaaccaccgtttatctcgctgtgaccacggcctactatacggtccacatggcctgtaatccggtac                gatggggcat
        tgttgtatttctattctttcagtttctaacttttaatttttggcaccggagggttccagtggtgagtttacaaa   gt     ag    tatgaaccac
        gccccacggcagatgattccccccggctcgctgcgcgggggcccgctcagggcggcagagcccggcccctccag                gagtgtcctc
                                                                                                            

Query   SVIHIAKGNDGSNSSWKSVGGKC-GTKCHLLDFANSERPLVVNFGSATUPPFTSQLSAFSKLVEEFSGVADFLLVYIDEAHPSDGWAAPGISPSSFEVKK
        ||/|//    | ||   /      |  |||||||/ |||||||||||||||||||| || ||||||| ||||||||||||||||||| || |  ||||||
Target  SVVHVSSAEGGDNSGHGTQEKIAEGAACHLLDFASPERPLVVNFGSATUPPFTSQLPAFRKLVEEFSSVADFLLVYIDEAHPSDGWAIPGDSSLSFEVKK
        aggcgtagggggaagcgacgaagggggtcccgtgacgcccggatgtgatcctaacccgtcacgggtttgggtccgtagggcctggtgacggtttttggaa
        gttatcgcaggaaggagcaaatcagccgattatcgcagctttatgcccgcctcgatcctgattaatcctcattttataacaccaggctcgacctctataa
        tggtcctaaatcctcctcgggatgccaccctcttctgcaagccttactattcgcggacccaggagccagcccggccttgttaatcggatgcctgttgggg
                                                        *                                                   

Query   HRNQEDRCAAAHQLLERFSLPPQCQVVADCMDNNANVAYGVSFERVCIVQRQKIAYLGGKGPFFYNLQEVRLWLEQNFSKR
        |/||||||||| ||||||||||||/|||| ||||||/||||/||||||||||||||||||||| ||||||| |||/|||||
Target  HQNQEDRCAAAQQLLERFSLPPQCRVVADRMDNNANIAYGVAFERVCIVQRQKIAYLGGKGPFSYNLQEVRHWLEKNFSKR
        ccacggctgggccccgctttccctcggggcagaagaagtgggtgcgtagcacaagtcggagctttaccggcctcgaataaa
        aaaaaaggcccaattagtctccaggttcagtaaacatcagtctagtgttagaatcatggagctcaataatgagtaaatgag
        cgcgatataacggtggtccggcgcatgtccgcttccatcgactatgctggagacttgaagcccccctaacgtggggtccga
                                                                                         
------- positions -------
Exon 1    57530508     57530729
Exon 2    57521968     57522540

-------- features -------
None
--------- 3' seq --------
Total sequence length available downstream >= 6000
Sequence until first stop codon: 
TGA
 *