genewise output
Score 540.11 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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SPP00000002_2.0    1 MGLPQPGLWLKRLWVLLEVAVHVVVGKVLLILFPDRVKRNILAMGEKTG 
                     MGLPQ GLW+K+LWVLLEVAVHVVVGKVLLILFPDRVKRNILAMGEKTG 
                     MGLPQSGLWVKKLWVLLEVAVHVVVGKVLLILFPDRVKRNILAMGEKTG 
gi|511782573|-115869 agccctgctgaactgccggggcggggagccattcgagacaacgaggaag 
                     tgtcacgtgtaatgtttatctatttgattttttcagtagattctgaacg 
                     gggcgaggggggcggcgggtctgcgtagtgagtacacggccgcgcggct 


SPP00000002_2.0   50 MTRNPHFSHDNWIPTFFSTQYFWFVLKVRWQRLEDTTELGGLAPNCPVV 
                     MTRNPHFSHDNWIPTFFSTQYFWFVLKVRWQRLEDTTELGGLAPNCPVV 
                     MTRNPHFSHDNWIPTFFSTQYFWFVLKVRWQRLEDTTELGGLAPNCPVV 
gi|511782573|-115722 aaaacctacgatacattaacttttgtagctcccggaagcggcgcatcgg 
                     tcgacatgaaagtccttgcaatgtttatggagtaaccatggtccagctt 
                     gcgcctcccccgcgctcccgtcgccggctggaagcgtgagtgcaccagc 


SPP00000002_2.0   99 RLSGQRCNIWEFMQ                          NRPLVLNFG 
                     RLSGQRCNIW+FMQ                          NRPLVLNFG 
                     RLSGQRCNIWDFMQ          G:G[ggc]        NRPLVLNFG 
gi|511782573|-115575 cctgcataatgtacGGTCAGGA  Intron 1   CAGGCaaccgcatg 
                     gtcgaggatgatta <1-----[115532:10555-1>  agctttatg 
                     ccaaggcctgctga                          tgagggtta 


SPP00000002_2.0  123 SCTXPSFMFKFDQFKRLIEDFSSIADFLVIYIEEAHAS            
                     SCTXPSFMFKFDQFKRLIEDFSSIADFL+IYIEEAHAS            
                     SCTXPSFMFKFDQFKRLIEDFSSIADFLIIYIEEAHAS            
gi|511782573|-105521 atatcttatatgctaacaggtataggtcaatagggcgt            
                     ggcgcctttataatagttaatgctcattttataacacc            
                     ttcatatgcatcacggttacttcaattcctctaaataa            


SPP00000002_2.0  161                           GWAFKNNMDIRNHQNLQDRLQAA 
                                               GWAFKNNMDIRNH+NLQDRLQAA 
                               D:D[gat]        GWAFKNNMDIRNHRNLQDRLQAA 
gi|511782573|-105407 GGTACAGA  Intron 2   TAGATgtgtaaaagaaaccaccgcccgg 
                      <1-----[105406:10389-1>  ggctaaatatgaagataagtacc 
                                               cgttgccgccatcgctgccggac 


SPP00000002_2.0  185 HLLLARSPQCPVVVDTMQNQSSQLYAALPERLYIIQEGRILYK       
                     HLLLARSPQCPVVVDTMQNQSSQLYAALPERLY+IQEGRILYK       
                     HLLLARSPQCPVVVDTMQNQSSQLYAALPERLYVIQEGRILYK       
gi|511782573|-103824 ccccgaacctcggggaacacaacctggccgactgacggaacta       
                     atttcggcagctttactaaaggatacctcagtattaaggttaa       
                     taggcgccgctgggtcggcgccgccaagtggccacggcgcccg       


SPP00000002_2.0  228                        GKSGPWNYNPEEVRAVLEKLHS     
                                            GKSGPWNYNPEEVRAVLEKL+S     
                                            GKSGPWNYNPEEVRAVLEKLYS     
gi|511782573|-103695 GTGGTGA  Intron 3   CAGgatgctatacgggcggcgacta     
                     <0-----[103695:10006-0>gacgcgaaacaatgcttaatag     
                                            tacctgcctagattttgagcct     


//
Making a G in phase 1 intron
Making a D in phase 1 intron
>gi|511782573|gb|CM001961.1|:subseq(78925275,215869).pep
MGLPQSGLWVKKLWVLLEVAVHVVVGKVLLILFPDRVKRNILAMGEKTGMTRNPHFSHDN
WIPTFFSTQYFWFVLKVRWQRLEDTTELGGLAPNCPVVRLSGQRCNIWDFMQGNRPLVLN
FGSCTXPSFMFKFDQFKRLIEDFSSIADFLIIYIEEAHASDGWAFKNNMDIRNHRNLQDR
LQAAHLLLARSPQCPVVVDTMQNQSSQLYAALPERLYVIQEGRILYKGKSGPWNYNPEEV
RAVLEKLYS
//
>gi|511782573|gb|CM001961.1|:subseq(78925275,215869).[115869:99998].sp
ATGGGGCTGCCCCAGTCAGGGCTGTGGGTGAAGAAGCTCTGGGTGCTCCTGGAGGTGGCT
GTCCATGTGGTCGTGGGTAAAGTGCTTCTGATATTGTTTCCAGACAGAGTCAAGCGGAAC
ATCCTGGCCATGGGCGAGAAGACCGGTATGACCAGGAACCCCCATTTCAGCCACGACAAC
TGGATCCCGACCTTTTTCAGCACCCAGTATTTCTGGTTCGTCTTGAAGGTCCGTTGGCAG
CGACTAGAGGACACGACTGAGCTAGGGGGTCTGGCCCCAAACTGCCCAGTGGTCCGCCTC
TCAGGACAGAGGTGCAACATTTGGGACTTTATGCAAGGCAATAGGCCACTGGTGCTGAAT
TTTGGAAGTTGTACCTGACCTTCATTTATGTTCAAATTTGACCAATTCAAGAGGCTTATT
GAAGACTTTAGTTCCATAGCAGATTTTCTCATCATTTACATTGAAGAAGCACATGCATCA
GATGGCTGGGCTTTTAAGAACAACATGGACATCAGAAATCACCGGAACCTTCAGGACCGC
CTGCAGGCAGCCCATCTACTGCTGGCCAGGAGCCCCCAGTGCCCTGTGGTGGTGGATACC
ATGCAGAACCAGAGCAGCCAGCTCTACGCAGCACTGCCTGAGAGGCTCTACGTAATCCAG
GAGGGCAGGATCCTCTACAAGGGTAAATCCGGCCCTTGGAACTACAATCCAGAGGAAGTT
CGTGCTGTTCTGGAAAAGCTCTACAGT
//
gi|511782573|gb|CM001961.1|:subseq(78925275,215869)	GeneWise	match	115869	100000	540.11	-	.	gi|511782573|gb|CM001961.1|:subseq(78925275,215869)-genewise-prediction-1
gi|511782573|gb|CM001961.1|:subseq(78925275,215869)	GeneWise	cds	115869	115533	0.00	-	0	gi|511782573|gb|CM001961.1|:subseq(78925275,215869)-genewise-prediction-1
gi|511782573|gb|CM001961.1|:subseq(78925275,215869)	GeneWise	intron	115532	105551	0.00	-	.	gi|511782573|gb|CM001961.1|:subseq(78925275,215869)-genewise-prediction-1
gi|511782573|gb|CM001961.1|:subseq(78925275,215869)	GeneWise	cds	105550	105407	0.00	-	2	gi|511782573|gb|CM001961.1|:subseq(78925275,215869)-genewise-prediction-1
gi|511782573|gb|CM001961.1|:subseq(78925275,215869)	GeneWise	intron	105406	103896	0.00	-	.	gi|511782573|gb|CM001961.1|:subseq(78925275,215869)-genewise-prediction-1
gi|511782573|gb|CM001961.1|:subseq(78925275,215869)	GeneWise	cds	103895	103696	0.00	-	2	gi|511782573|gb|CM001961.1|:subseq(78925275,215869)-genewise-prediction-1
gi|511782573|gb|CM001961.1|:subseq(78925275,215869)	GeneWise	intron	103695	100066	0.00	-	.	gi|511782573|gb|CM001961.1|:subseq(78925275,215869)-genewise-prediction-1
gi|511782573|gb|CM001961.1|:subseq(78925275,215869)	GeneWise	cds	100065	100000	0.00	-	0	gi|511782573|gb|CM001961.1|:subseq(78925275,215869)-genewise-prediction-1
//