Output_id:  DI.6.selenocysteine
----------  -------------------
-Species        Chlorocebus sabaeus                          -Taxid 60711
-Target         /home/U73970/luke/Selenoprofiles/selenoprofiles_3_installation/genome_linked/genome.fa
-Chromosome (-) gi|511782573|gb|CM001961.1|
-Program        genewise
-Query name     gi|55742738|ref|NP_001007127.1| deiodinase, iodothyronine, type I [Canis lupus familiaris] gi|73955253|ref|XP_855606.1| PREDICTED: type I iodothyronine deiodinase [Canis familiaris] gi|172046861|sp|P49894.2|IOD1_CANFA RecName: Full=Type I iodothyronine d
-Query range    1-244      length:244   coverage: 1.0
-Profile range  1-486      length:486   coverage: 1.0    sec_position: [257]
-ASI:           0.3308     (ignoring gaps: 0.4261)
-AWSIc:         0.6849     Z-score: 0.797
-AWSIw:         0.6851     Z-score: 0.594
-State          kept

------- alignment -------
Query   MGLPRPVLWLRRLWVLLQVAVQVAVGKVFLKLFPARVKQHIVAMNGK-----NPHFSYDNWAPTLYSMQYFWFVLKVQWQRLEDRTEPGGLAPNCPVVRL
        ||||/  ||///|||||/||| | |||| | ||| |||//|/||  |     |||||/||| || /| |||||||||/|||||| || ||||||||||||
Target  MGLPQSGLWVKKLWVLLEVAVHVVVGKVLLILFPDRVKRNILAMGEKTGMTRNPHFSHDNWIPTFFSTQYFWFVLKVRWQRLEDTTELGGLAPNCPVVRL
        agccctgctgaactgccggggcggggagccattcgagacaacgaggaagaaaacctacgatacattaacttttgtagctcccggaagcggcgcatcggcc
        tgtcacgtgtaatgtttatctatttgattttttcagtagattctgaacgtcgacatgaaagtccttgcaatgtttatggagtaaccatggtccagcttgt
        gggcgaggggggcggcgggtctgcgtagtgagtacacggccgcgcggctgcgcctcccccgcgctcccgtcgccggctggaagcgtgagtgcaccagccc
                                                                                                            

Query   SGQRCNIWDFMQG <---Intron---> NRPLVLNFGSCTUPSFLFKFDQFKRLIEDFCSTADFLIIYIEEAHASD <---Intron---> GWAFKNN
        ||||||||||||| <   9982nt   > ||||||||||||||||/||||||||||||| | ||||||||||||||| <   1511nt   > |||||||
Target  SGQRCNIWDFMQG                NRPLVLNFGSCTUPSFMFKFDQFKRLIEDFSSIADFLIIYIEEAHASD                GWAFKNN
        tgcataatgtacg                aaccgcatgatatcttatatgctaacaggtataggtcaatagggcgtg                gtgtaaa
        cgaggatgatta    gt     ag   gagctttatgggcgcctttataatagttaatgctcattttataacacc    gt     ag   aggctaaa
        aaggcctgctga                ctgagggttattcatatgcatcacggttacttcaattcctctaaataa                tcgttgcc
                                                 *                                                          

Query   VNIRTHQTLQDRLQAARLLLDRAPPCPVVVDTMRNQSSQFYAALPERLFVLQEGRILYK <---Intron---> GKPGPWNYHPEEVRAVLEKLHS
        //|| |/ |||||||| ||| |/| ||||||||/||||| ||||||||/|/|||||||| <   3630nt   > || |||||/|||||||||||/|
Target  MDIRNHRNLQDRLQAAHLLLARSPQCPVVVDTMQNQSSQLYAALPERLYVIQEGRILYK                GKSGPWNYNPEEVRAVLEKLYS
        agaaaccaccgcccggccccgaacctcggggaacacaacctggccgactgacggaacta                gatgctatacgggcggcgacta
        tatgaagataagtaccatttcggcagctttactaaaggatacctcagtattaaggttaa   gt     ag    gacgcgaaacaatgcttaatag
        gccatcgctgccggactaggcgccgctgggtcggcgccgccaagtggccacggcgcccg                tacctgcctagattttgagcct
                                                                                                         
------- positions -------
Exon 1    79040808     79041144
Exon 2    79030682     79030825
Exon 3    79028971     79029170
Exon 4    79025275     79025340

-------- features -------
None
--------- 3' seq --------
Total sequence length available downstream >= 6000
Sequence until first stop codon: 
TAA
 *