T-COFFEE, Version_7.54(Tue Jan 13 18:15:23 WEST 2009)
Cedric Notredame 
CPU TIME:0 sec.
SCORE=99
*
 BAD AVG GOOD
*
JH206810.1_subs   :  99
gi|172045965|sp   :  99
cons              :  99

JH206810.1_subs   ----------GLFLLGALESPGISSSMGGQPAASICRLGYCVQPA
gi|172045965|sp   MRAAGLGLGIGLLLLAALAGPGGSAEQGGVPAKKL-RMAYATGPL

cons                        **:**.** .** *:. ** ** .: *:.*.. * 


JH206810.1_subs   CTCRICVSUGYRRVFEEYMRVISQRYPDIRIEGENYLPQPIYRHI
gi|172045965|sp   LKFQICVSUGYRRVFEEYMRVISQRYPDIRIEGENYLPQPIYRHI

cons               . :*****************************************


JH206810.1_subs   ASFLSVFKLVLIGLIIVGKDPFAFFGMQAPSIWQWGQENKVYACM
gi|172045965|sp   ASFLSVFKLVLIGLIIVGKDPFAFFGMQAPSIWQWGQENKVYACM

cons              *********************************************


JH206810.1_subs   MVFFLSNMIENQCMSTGAFEITLNDVPVWSKLESGHLPSMQQLVQ
gi|172045965|sp   MVFFLSNMIENQCMSTGAFEITLNDVPVWSKLESGHLPSMQQLVQ

cons              *********************************************


JH206810.1_subs   ILDNEMKLNVHMESMHHHRS
gi|172045965|sp   ILDNEMKLNVHMESMPHHRS

cons              *************** ****