T-COFFEE, Version_7.54(Tue Jan 13 18:15:23 WEST 2009)
Cedric Notredame 
CPU TIME:0 sec.
SCORE=99
*
 BAD AVG GOOD
*
JH210532.1_subs   :  99
gi|70906483|ref   :  99
cons              :  99

JH210532.1_subs   MVYISNGQVLDTQSRAPWSLSFITDFFWGIADFVVLFFQSIVQPN
gi|70906483|ref   MVYISNGQVLDNRSRAPWSLSAITDFFWSIADFVVMFFQSIIQPD

cons              ***********.:******** ******.******:*****:**:


JH210532.1_subs   LRRRGYTSSSNSRYDDGRGPPGNPRRRMGRINH-GGGPSPPPMAG
gi|70906483|ref   LRRRGYTSSSYLGQSDGRGPPGNPRRRMGRINHWGGGPSPPPMAG

cons              **********    .****************** ***********


JH210532.1_subs   GGUGR
gi|70906483|ref   GGUGR

cons              *****