T-COFFEE, Version_7.54(Tue Jan 13 18:15:23 WEST 2009)
Cedric Notredame 
CPU TIME:0 sec.
SCORE=99
*
 BAD AVG GOOD
*
gi|148277073|re   :  99
JH224648.1_subs   :  99
cons              :  99

gi|148277073|re   MNGHTAVPHSYDYDLIVIGGGSGGLAAAKEAAKYEKKVMVLDFVT
JH224648.1_subs   ---------------------------------------------

cons                                                           


gi|148277073|re   PTPLGNSWGLGGTCVNVGCIPKKLMHQAALLGQALQDSRKFGWQF
JH224648.1_subs   ---------------------------------------------

cons                                                           


gi|148277073|re   TEEVKHNWMTMTESVQNYIGSLNWGYRVALREKKVTYENAYGEFV
JH224648.1_subs   ---------------------------------------------

cons                                                           


gi|148277073|re   GPHTVKATNKRGVEKLYTAERFLIATGERPRYLGIPGDKEYCISS
JH224648.1_subs   ---------------------------------------SFIFFS

cons                                                     .: : *


gi|148277073|re   DDLFSLPYCPGKTLVVGASYVALECAGFLAGLGLDVTVMVRSILL
JH224648.1_subs   DDLFSLPYCPGKTLVVGASYVALECAGFLAGLGLDVTVMVRSILL

cons              *********************************************


gi|148277073|re   RGFDQDMANKIGEYMEEHGIKFIREFVPIKVEQIEEGTPGRLKVT
JH224648.1_subs   RGFDQEMANKIGEHMEEHGIKFIKQFVPTKVEQIEAGTPGKLKVI

cons              *****:*******:*********::*** ****** ****:*** 


gi|148277073|re   AKSTKDDQVIEEEYNTVLLAIGRDACTRKIGLDKVGVKINEKTGK
JH224648.1_subs   AQSTDGKEIIEGEYNTVLLAVGRDACTRTIGLDKVGVKINERSGK

cons              *:**...::** ********:*******.************::**


gi|148277073|re   IPVDDMEQTNVPYIYAIGDILQDRLELTPVAIQAGRLLVQRLYAG
JH224648.1_subs   IPVSDEEQTNVPYIYAIGDVLEGKLELTPVAIQAGKLLARRLYAE

cons              ***.* *************:*:.:***********:**.:**** 


gi|148277073|re   STLKCDYVNVPTTVFTPLEYGACGYSEENAIQKFGEENIEVYHSH
JH224648.1_subs   ATLKCDYVNVPTTVFTPLEYGACGFSEETALEKFGEENIEVYHSY

cons              :***********************:***.*::************:


gi|148277073|re   FWPLEWTVPSRDNNKCYAKIICNIQDNQRVIGFHVLGPNAGEVTQ
JH224648.1_subs   FWPLEWTVPSRDNNKCYAKIICNIQDNERVIGFHVLGPNAGDVTQ

cons              ***************************:*************:***


gi|148277073|re   GFAAAMKCGLTKDQLDSTIGIHPVCAEVFTTLSITKRSGENTLQS
JH224648.1_subs   GFSAAIKCGLTKAQLDNTIGIHPVCAEIFTTLSVTKRSGGSVLQS

cons              **:**:****** ***.**********:*****:***** ..***


gi|148277073|re   GCUG
JH224648.1_subs   GCUG

cons              ****