T-COFFEE, Version_7.54(Tue Jan 13 18:15:23 WEST 2009)
Cedric Notredame 
CPU TIME:0 sec.
SCORE=97
*
 BAD AVG GOOD
*
gi|39937892|ref   :  97
JH209127.1_subs   :  97
cons              :  97

gi|39937892|ref   MFFMRKSTAMPSAAEALPGRPTPIPTARTHFVSGNRLQPPFPEGL
JH209127.1_subs   ---------------------------------------------

cons                                                           


gi|39937892|ref   QQAVFGLGCFWGAERKFWQLGDGVYSTAVGYAGGFTPNPTYEEVC
JH209127.1_subs   ---------------------------------------------

cons                                                           


gi|39937892|ref   SGRTGHTEVVLVVFDPARISYEALLKTFWESHDPTQGMRQGNDVG
JH209127.1_subs   ---------------------------------------------

cons                                                           


gi|39937892|ref   SQYRSAIYTFGDDQKRAAEASRVTYGDALKAKGYGPITTEIAASG
JH209127.1_subs   --------------------------QVLTEKGFGTITTEIREAP

cons                                        :.*. **:*.*****  : 


gi|39937892|ref   PFYYAEDYHQQYLAKNPGGYCGLGGTGVSCPVGVRVTA
JH209127.1_subs   EFYYAEDYHQQYLNKNPNGYCGLGGTGVSCPIR----I

cons               ************ ***.*************: