T-COFFEE, Version_7.54(Tue Jan 13 18:15:23 WEST 2009)
Cedric Notredame 
CPU TIME:0 sec.
SCORE=99
*
 BAD AVG GOOD
*
gi|119892367|re   :  99
JH210665.1_subs   :  99
cons              :  99

gi|119892367|re   MSPRRTLPRPFLLCLCLSLCLAAAAARGAVQSGSCRDKKNCKVVF
JH210665.1_subs   ---------------------------------------------

cons                                                           


gi|119892367|re   SQQELRKRLTPLQYHVTQEKGTESAFEGEYTHHKDPGIYKCVVCG
JH210665.1_subs   ---------------------------------------------

cons                                                           


gi|119892367|re   TPLFKSETKFDSGSGWPSFHDVINSDAITFTDDFSYGMHRVETSC
JH210665.1_subs   -----SETKFDSNSGWPSFYDVISPDVIMFTDDFSYGMHRIETGC

cons                   *******.******:***..*.* ***********:**.*


gi|119892367|re   SQCGAHLGHIFDDGPRPTGKRYCINSASLSFSPAESSGAQGDSAG
JH210665.1_subs   SQCGAHLGHIFDDGPRPTGKRYCINSASLSFEPGDKNNAEEGCSS

cons              *******************************.*.:...*: ..:.


gi|119892367|re   GSPAPGDKTEL
JH210665.1_subs   TSPAQTDKTDL

cons               ***  ***:*