T-COFFEE, Version_7.54(Tue Jan 13 18:15:23 WEST 2009)
Cedric Notredame 
CPU TIME:0 sec.
SCORE=99
*
 BAD AVG GOOD
*
gi|169234793|re   :  99
JH208680.1_subs   :  99
cons              :  99

gi|169234793|re   MQRSGGVLRRGRADTERGETGGGWLSALRFDNLAMRSLPVDPFED
JH208680.1_subs   ---------------------------------------------

cons                                                           


gi|169234793|re   CAPRAVPGACFARVRPTPLRNPRLVAMSAPALALLGLEAGGPEAE
JH208680.1_subs   ---------------------------------------------

cons                                                           


gi|169234793|re   REAEAALYFSGNRLLPGSEPAAHCYCGHQFGSFAGQLGDGAAIYL
JH208680.1_subs   ---------------------------------------------

cons                                                           


gi|169234793|re   GEVRGPRGARWELQLKGAGITPFSRQADGRKVLRSSIREFLCSEA
JH208680.1_subs   -------------------LTPFSRQADGRKVLRSSIREFLCSEA

cons                                 :*************************


gi|169234793|re   MFHLGIPTTRAGTCVTSDSEVVRDIFYDGNPKKERCTVVLRIAST
JH208680.1_subs   MFHLGIPTTRAGTCVTSDSKVVRDVFYDGNPKNERCTIVLRIAST

cons              *******************:****:*******:****:*******


gi|169234793|re   FIRFGSFEIFKPPDEYTGRKGPSVNRNDIRIQMLDYVIGTFYPEI
JH208680.1_subs   FIRFGSFEIFKPTDEYTGRKGPSVNRNDIRIQMLNYVISTFYPEI

cons              ************.*********************:***.******


gi|169234793|re   QEAHADNSIQRNAAFFKEITKRTARLVAEWQCVGFCHGVLNTDNM
JH208680.1_subs   QQAYSDNSVQRNAAFFREVTKRTARLVADWQCVGFCHGVLNTDNM

cons              *:*::***:*******:*:*********:****************


gi|169234793|re   SIVGLTIDYGPFGFMDRYDPEHICNGSDNTGRYAYNRQPEICKWN
JH208680.1_subs   SIVGLTIDYGPFGFMDRYDPDHICNGSDKTGRYAYNKQPEICKWN

cons              ********************:*******:*******:********


gi|169234793|re   LGKLAEALVPELPLEISELILEEEYDAEFEKHYLQKMRKKLGLIQ
JH208680.1_subs   LGKLAEVLVPELPLEISELILKEEYNAEFERHYLQKMRKKLGLIH

cons              ******.**************:***:****:*************:


gi|169234793|re   LELEEDSKLVSELLETMHLTGGDFTNIFYLLSSFSVDTDPSRLED
JH208680.1_subs   LELEEDDKLVSELLETMHITGGDFTNTFRLLSSFSVDSDPLKLED

cons              ******.***********:******* * ********:** :***


gi|169234793|re   FLEKLISQCASVEELRVAFKPQMDPRQLSMMLMLAQSNPQLFALI
JH208680.1_subs   FLEKIATQCSSMEELKVAFRPQMDPRQLSMMLMLAQSNPQLFALI

cons              ****: :**:*:***:***:*************************


gi|169234793|re   GTKANINKELERIEQFSKLQQLTAADLLSRNKRHWTEWLEKYRVR
JH208680.1_subs   GTKANINKELERIEQYSKLQQLTAADLLGRNKRHWKEWLQKYRVR

cons              ***************:************.******.***:*****


gi|169234793|re   LHKEVESISDVDAWNTERVKVMNSNNPRYILRNYIAQNAIEAAEN
JH208680.1_subs   LQKEIESVSDAEVWNTERVKIMNSNNPKYILRNYIAQNAIEAAEN

cons              *:**:**:**.:.*******:******:*****************


gi|169234793|re   GDFSEVRNVLKLLENPFQETEDSTEME--TKEEEATATAAACAQA
JH208680.1_subs   GDFTEVREVLKRLENPFEEMEGLTEVQEDQEEEESVAAAATCAPL

cons              ***:***:*** *****:* *. **::   :***:.*:**:**  


gi|169234793|re   TRSRLSYCSKPPLWASELCVTUSS
JH208680.1_subs   TSRRLPYSSKPPLWASELCVTUSS

cons              *  **.*.****************