T-COFFEE, Version_7.54(Tue Jan 13 18:15:23 WEST 2009)
Cedric Notredame 
CPU TIME:0 sec.
SCORE=96
*
 BAD AVG GOOD
*
gi|363738638|re   :  96
JH208026.1_subs   :  96
cons              :  96

gi|363738638|re   MAAGSAPPRVLNVNVGVLGHIDSGKTALARALSTTGSTAAFDRFT
JH208026.1_subs   ---------------------------------------------

cons                                                           


gi|363738638|re   LVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGMQTQSAECLVIG
JH208026.1_subs   ---------------------------------------------

cons                                                           


gi|363738638|re   QIACQKMVVVLNKIDLLPEAKRQSAIEKMTKKMQKTLENTKFCGC
JH208026.1_subs   ---------------------------------------------

cons                                                           


gi|363738638|re   PIVAVAAKPGGPEAPESENPLGVSELIEVLKSQAYLPSRDPSGHF
JH208026.1_subs   ---------------------------------------------

cons                                                           


gi|363738638|re   LMAVDHCFSIKGQGTVMTGTILSGSVSLGDNVEIPALKVTKKVKS
JH208026.1_subs   -----------------VGDVVFPHVRAGQEAPEPSLQVTKKVKS

cons                               .* ::   *  *::.  *:*:*******


gi|363738638|re   MQMFHTPVTYAMQGDRVGICVTQFDPKLLERGLICTPESLHTIHA
JH208026.1_subs   MQMFHTPVTYAMQGDRVGVCVTQFDPKLLERGLICTPESLQTIHA

cons              ******************:*********************:****


gi|363738638|re   AIISLKKIQYFRGALQTKAKFHITVGHETVMGRVMFFSPAPADFN
JH208026.1_subs   AVISLKKIQYFRGALQTKAKFHITVGHETVMGRVMFFSPAPADFS

cons              *:******************************************.


gi|363738638|re   EEIQENVFDFDKDYLYQEEYLSKDSKPSEENKENGQS-EVQLPKQ
JH208026.1_subs   KEPWETAFDFEKEYLYQEEYLSKGSNSSEENKENDQSGEGQLPRQ

cons              :*  *..***:*:**********.*:.*******.** * ***:*


gi|363738638|re   QWALLEFEKPVTCPKLCLVIGSKLDTDIHANTCRLAFHGVLLQGM
JH208026.1_subs   QWALLEFEKPVTCPKLCLVIGSKLDTDIHANTCRLAFHGVLLQGM

cons              *********************************************


gi|363738638|re   EDKNYAETFLPKLKVYKQKHKEGQVERVMDDYSVIGRSLFKKETN
JH208026.1_subs   EDKNYIETFLPKLKVYKLKHKQGQVERVMENNPIPGTSCF-----

cons              ***** *********** ***:*******:: .: * * *     


gi|363738638|re   IQIFVGLKVKLSTGEEGIIDGGFGQSGKFKIRIPGGLKPETKMLL
JH208026.1_subs   ---------------------------------------------

cons                                                           


gi|363738638|re   SAASKKKSKAGKGDANKEDESSKNDSAQPVTITLLFKRYVFDTQK
JH208026.1_subs   ---------------------------------------------

cons                                                           


gi|363738638|re   KMIQS
JH208026.1_subs   -----

cons