SELENOPROTEÍNAS DE Meleagris gallopavo
PROTEIN REPORT FOR Selenophosphate synthetase1 (SPS1)
| DESCRIPCIÓN | Maquinaria síntesis Selenoproteínas. Homólogo con Tyr. 1(+):8220148...8239794. |
| SECISearch | Sin resultados. |
| SELENOPROFILES | Encontrada. Elemento Secis predicho (strand:+ positions:8241561-8241669) |
| COMENTARIOS | Elección: Genewise. Buen multiple-alignment. Filtro SECISearch posible razón no encuentro elemento SECIS (región 2-3kb del extremo 3' según la predicción de Selenoprofiles), aunque al ser de la maquinaria puede que realmente no los presente. Vemos homólogos con selenocisteína, con tirosina y con arginina (en el caso de Meleagris gallopavo, se trata de una Tyr). El hecho de que la posición no esté conservada puede deberse al hecho que se trata de una proteína de la maquinaria de síntesis de Selenoproteínas. |
1. ALINEAMIENTO MÚLTIPLE DE TODOS LOS HOMÓLOGOS DE SELENODB
2. BEST PAIRWISE ALIGNMENT
4. RESULTADOS DEL Selenoprofiles
ALINEAMIENTO MÚLTIPLE DE TODOS LOS HOMÓLOGOS DE SELENODB
CLUSTAL FORMAT for T-COFFEE Version_7.54, SCORE=73, Nseq=30, Len=461
SPP00000033_1.0 MAEASATGACGEAMAA---AEGSSGPAGLTLGRSFSNYRPFEPQALGLSPSWRLTGFSGM
SPP00000033_1.0.1.exonerate SGE---------------------GKASTLWERTMSVRETFNPESYELDKSFRLTRFTEL
SPP00000033_1.0.1.genewise --------------------------------RTMSVRETFNPESYELDKSFRLTRFTEL
SPP00000073_1.0 MAEASATGACGEAMAA---AEGSSGPAGLTLGRSFSNYRPFEPQALGLSPSWRLTGFSGM
SPP00000073_1.0.1.exonerate SGE---------------------GKASTLWERTMSVRETFNPESYELDKSFRLTRFTEL
SPP00000073_1.0.1.genewise --------------------------------RTMSVRETFNPESYELDKSFRLTRFTEL
SPP00000108_1.0 MAEAAAAGASGETMAALVAAEGSLGPAGWSAGRSFSNYRPFEPQTLGFSPSWRLTSFSGM
SPP00000108_1.0.1.exonerate ------------------------GKASTLWERTMSVRETFNPESYELDKSFRLTRFTEL
SPP00000108_1.0.1.genewise --------------------------------RTMSVRETFNPESYELDKSFRLTRFTEL
SPP00000032_1.0 ----------------------------------MSTRESFNPESYELDKSFRLTRFTEL
SPP00000032_1.0.1.exonerate ----------------------------------MSVRETFNPESYELDKSFRLTRFTEL
SPP00000032_1.0.1.genewise ----------------------------------MSVRETFNPESYELDKSFRLTRFTEL
SPP00000055_1.0 MGDYQQDPM---------------VHLELTGNTGMVLRRPFDPTAHDLDASFRLTRFADL
SPP00000055_1.0.1.exonerate ----------------------------------MSVRETFNPESYELDKSFRLTRFTEL
SPP00000055_1.0.1.genewise ----------------------------------MSVRETFNPESYELDKSFRLTRFTEL
SPP00000072_1.0 ----------------------------------MSTRESFNPESYELDKSFRLT-FTEL
SPP00000072_1.0.1.exonerate ----------------------------------MSVRETFNPESYELDKSFRLTRFTEL
SPP00000072_1.0.1.genewise ----------------------------------MSVRETFNPESYELDKSFRLTRFTEL
SPP00000107_1.0 ----------------------------------MSTRESFNPETYELDKSFRLTRFTEL
SPP00000107_1.0.1.exonerate ----------------------------------MSVRETFNPESYELDKSFRLTRFTEL
SPP00000107_1.0.1.genewise ----------------------------------MSVRETFNPESYELDKSFRLTRFTEL
SPP00000047_1.0 MSYAAD-VL-------------NSAHLELHGGGDAELRRPFDPTAHDLDASFRLTRFADL
SPP00000047_1.0.1.exonerate -----------------------------------SVRETFNPESYELDKSFRLTRFTEL
SPP00000047_1.0.1.genewise ------------------------------------VRETFNPESYELDKSFRLTRFTEL
SPP00000056_1.0 ---------------------------------------MFKPESYGLSHDFRLTKFSTL
SPP00000056_1.0.1.exonerate ----------------------------------------FNPESYELDKSFRLTRFTEL
SPP00000056_1.0.1.genewise ----------------------------------------FNPESYELDKSFRLTRFTEL
SPP00000048_1.0 ---------------------------------------MFQPEKHGLEPDFQLTKFTTH
SPP00000048_1.0.1.exonerate ----------------------------------------FNPESYELDKSFRLTRFTEL
SPP00000048_1.0.1.genewise ----------------------------------------FNPESYELDKSFRLTRFTEL
*.* :. .::** *:
SPP00000033_1.0 KGUGCKVPQEALLKLLAGLTRPDVRPPLGRGLVGGQEEASQEAGLPAGAGPSPTFPALGI
SPP00000033_1.0.1.exonerate KGTGCKVPQDVLQKLLESLQENHFQSCLGRALSKICVLASFTFSLMYGKVKSRQMPAIRI
SPP00000033_1.0.1.genewise KGTGCKVPQDVLQKLLESLQENHFQEDE--------------------QFLGAVMPRLGI
SPP00000073_1.0 KGUGCKVPQEALLKLLAGLTRPDVRPPLGRGLVGGQEEASQEAGLPAGADPSPTFPALGI
SPP00000073_1.0.1.exonerate KGTGCKVPQDVLQKLLESLQENHFQSCLGRALSKICVLASFTFSLMYGKVKSRQMPAIRI
SPP00000073_1.0.1.genewise KGTGCKVPQDVLQKLLESLQENHFQEDE--------------------QFLGAVMPRLGI
SPP00000108_1.0 KGUGCKVPQETLLKLLEGLTRPALQPPLTSGLVGGQEETVQEGGLSTRPGPGSAFPSLSI
SPP00000108_1.0.1.exonerate KGTGCKVPQDVLQKLLESLQENHFQSPALLGIQSGARHLAVSLGRRSKAELSAVFPNSGI
SPP00000108_1.0.1.genewise KGTGCKVPQDVLQKLLESLQENHFQEDE--------------------QFLGAVMPRLGI
SPP00000032_1.0 KGTGCKVPQDVLQKLLESLQENHFQEDE--------------------QFLGAVMPRLGI
SPP00000032_1.0.1.exonerate KGTGCKVPQDVLQKLLESLQENHFQEDE--------------------QFLGAVMPRLGI
SPP00000032_1.0.1.genewise KGTGCKVPQDVLQKLLESLQENHFQEDE--------------------QFLGAVMPRLGI
SPP00000055_1.0 KGRCCKVPKEVLEKLVSSLQQDYMQDPD-------------------QPFMPMSSPRIGI
SPP00000055_1.0.1.exonerate KGTGCKVPQDVLQKLLESLQENHFQEDE--------------------QFLGAVMPRLGI
SPP00000055_1.0.1.genewise KGTGCKVPQDVLQKLLESLQENHFQEDE--------------------QFLGAVMPRLGI
SPP00000072_1.0 KGTGCKVPQDVLQKLLESLQENHFQEDE--------------------QFLGAVMPRLGI
SPP00000072_1.0.1.exonerate KGTGCKVPQDVLQKLLESLQENHFQEDE--------------------QFLGAVMPRLGI
SPP00000072_1.0.1.genewise KGTGCKVPQDVLQKLLESLQENHFQEDE--------------------QFLGAVMPRLGI
SPP00000107_1.0 KGTGCKVPQDVLQKLLESLQENHFQEDE--------------------QFLGAVMPRLGI
SPP00000107_1.0.1.exonerate KGTGCKVPQDVLQKLLESLQENHFQEDE--------------------QFLGAVMPRLGI
SPP00000107_1.0.1.genewise KGTGCKVPQDVLQKLLESLQENHFQEDE--------------------QFLGAVMPRLGI
SPP00000047_1.0 KGRGCKVPQDVLSKLVSALQQDYSAQDQ------------------EPQFLNVAIPRIGI
SPP00000047_1.0.1.exonerate KGTGCKVPQDVLQKLLESLQENHFQEDE--------------------QFLGAVMPRLGI
SPP00000047_1.0.1.genewise KGTGCKVPQDVLQKLLESLQENHFQEDE--------------------QFLGAVMPRLGI
SPP00000056_1.0 RGUGSKVPQDVLNRLLAGVYGEQLGDKD--------------------GKGPNKEEGVGI
SPP00000056_1.0.1.exonerate KGTGCKVPQDVLQKLLESLQENHFQEDE--------------------QFLGAVMPRLGI
SPP00000056_1.0.1.genewise KGTGCKVPQDVLQKLLESLQENHFQEDE--------------------QFLGAVMPRLGI
SPP00000048_1.0 TGUSCKIPQKVLEKYLRGTEIENKNNDG--------------------YL-------IGS
SPP00000048_1.0.1.exonerate KGTGCKVPQDVLQKLLESLQENHFQEDE--------------------QF-------LGI
SPP00000048_1.0.1.genewise KGTGCKVPQDVLQKLLESLQENHFQEDE--------------------QFLGAVMPRLGI
* .*:*:..* : : .
SPP00000033_1.0 GMDSCVIPL-RHGGLSLVQTTDFFYPLVEDPYMMGRIACANVLSDLYAMGITECDNMLML
SPP00000033_1.0.1.exonerate GMDTCVIPL-RHGGLSLVQTTDYIYPIVDDPYMMGRIACANVLSDLYAMGVTECDNMLML
SPP00000033_1.0.1.genewise GMDTCVIPL-RHGGLSLVQTTDYIYPIVDDPYMMGRIACANVLSDLYAMGVTECDNMLML
SPP00000073_1.0 GMDSCVIPL-RHGGLSLVQTTDFFYPLVEDPYMMGRIACANVLSDLYAMGITECDNMLML
SPP00000073_1.0.1.exonerate GMDTCVIPL-RHGGLSLVQTTDYIYPIVDDPYMMGRIACANVLSDLYAMGVTECDNMLML
SPP00000073_1.0.1.genewise GMDTCVIPL-RHGGLSLVQTTDYIYPIVDDPYMMGRIACANVLSDLYAMGVTECDNMLML
SPP00000108_1.0 GMDSCVIPL-RHGGLSLVQTTDFFYPLVEDPYMMGRIACANVLSDLYAMGITECDNMLML
SPP00000108_1.0.1.exonerate GMDTCVIPL-RHGGLSLVQTTDYIYPIVDDPYMMGRIACANVLSDLYAMGVTECDNMLML
SPP00000108_1.0.1.genewise GMDTCVIPL-RHGGLSLVQTTDYIYPIVDDPYMMGRIACANVLSDLYAMGVTECDNMLML
SPP00000032_1.0 GMDTCVIPL-RHGGLSLVQTTDYIYPIVDDPYMMGRIACANVLSDLYAMGVTECDNMLML
SPP00000032_1.0.1.exonerate GMDTCVIPL-RHGGLSLVQTTDYIYPIVDDPYMMGRIACANVLSDLYAMGVTECDNMLML
SPP00000032_1.0.1.genewise GMDTCVIPL-RHGGLSLVQTTDYIYPIVDDPYMMGRIACANVLSDLYAMGVTECDNMLML
SPP00000055_1.0 GLDCSVIPL-RHGGLCMVQTTDFFYPIVDDPYMMGKIACANVLSDLYAMGVTEVDNMLML
SPP00000055_1.0.1.exonerate GMDTCVIPL-RHGGLSLVQTTDYIYPIVDDPYMMGRIACANVLSDLYAMGVTECDNMLML
SPP00000055_1.0.1.genewise GMDTCVIPL-RHGGLSLVQTTDYIYPIVDDPYMMGRIACANVLSDLYAMGVTECDNMLML
SPP00000072_1.0 GMDTCVIPL-RHGGLSLVQTTDYIYPIVDDPYMMGRIACANVLSDLYAMGVTECDNMLML
SPP00000072_1.0.1.exonerate GMDTCVIPL-RHGGLSLVQTTDYIYPIVDDPYMMGRIACANVLSDLYAMGVTECDNMLML
SPP00000072_1.0.1.genewise GMDTCVIPL-RHGGLSLVQTTDYIYPIVDDPYMMGRIACANVLSDLYAMGVTECDNMLML
SPP00000107_1.0 GMDTCVIPL-RHGGLSLVQTTDYIYPIVDDPYMMGRIACANVLSDLYAMGVTECDNMLML
SPP00000107_1.0.1.exonerate GMDTCVIPL-RHGGLSLVQTTDYIYPIVDDPYMMGRIACANVLSDLYAMGVTECDNMLML
SPP00000107_1.0.1.genewise GMDTCVIPL-RHGGLSLVQTTDYIYPIVDDPYMMGRIACANVLSDLYAMGVTECDNMLML
SPP00000047_1.0 GLDCSVIPL-RHGGLCLVQTTDFFYPIVDDPYMMGKIACANVLSDLYAMGVTDCDNMLML
SPP00000047_1.0.1.exonerate GMDTCVIPL-RHGGLSLVQTTDYIYPIVDDPYMMGRIACANVLSDLYAMGVTECDNMLML
SPP00000047_1.0.1.genewise GMDTCVIPL-RHGGLSLVQTTDYIYPIVDDPYMMGRIACANVLSDLYAMGVTECDNMLML
SPP00000056_1.0 GLDSSVIAL-KHD-LFLVQSVDFFYPLIDDPFMLGKIALANVVSDVFAVGATEIDQIKLI
SPP00000056_1.0.1.exonerate GMDTCVIPL-RHGGLSLVQTTDYIYPIVDDPYMMGRIACANVLSDLYAMGVTECDNMLML
SPP00000056_1.0.1.genewise GMDTCVIPL-RHGGLSLVQTTDYIYPIVDDPYMMGRIACANVLSDLYAMGVTECDNMLML
SPP00000048_1.0 GMDCAVIPLKRHKDYLLIQTVDFFYPMVNDPELLGRIALANVLSDVYAVGVTQFDTVEMI
SPP00000048_1.0.1.exonerate GMDTCVIPL-RHGGLSLVQTTDYIYPIVDDPYMMGRIACANVLSDLYAMGVTECDNMLML
SPP00000048_1.0.1.genewise GMDTCVIPL-RHGGLSLVQTTDYIYPIVDDPYMMGRIACANVLSDLYAMGVTECDNMLML
*:* .**.* :* ::*:.*::**:::** ::*:** ***:**::*:* *: * : ::
SPP00000033_1.0 LSVSQSMSEEEREKVTPLMVKGFRDAAEEGG---TAVTGGQTVVNPWIIIGGVATVVCQP
SPP00000033_1.0.1.exonerate LGVSNKMTDRERDKVMPLIIQGFKDAAEEAG---TSVTGGQTVLNPWIVLGGVATTVCQP
SPP00000033_1.0.1.genewise LGVSNKMTDRERDKVMPLIIQGFKDAAEEAG---TSVTGGQTVLNPWIVLGGVATTVCQP
SPP00000073_1.0 LSVSQSMSEEEREKVTPLMVKGFRDAAEEGG---TAVTGGQTVVNPWIIIGGVATVVCQP
SPP00000073_1.0.1.exonerate LGVSNKMTDRERDKVMPLIIQGFKDAAEEAG---TSVTGGQTVLNPWIVLGGVATTVCQP
SPP00000073_1.0.1.genewise LGVSNKMTDRERDKVMPLIIQGFKDAAEEAG---TSVTGGQTVLNPWIVLGGVATTVCQP
SPP00000108_1.0 LSVSQSMSEKEREKVTPLMIKGFRDAAEEGG---TAVTGGQTVVNPWIIIGGVATVVCQQ
SPP00000108_1.0.1.exonerate LGVSNKMTDRERDKVMPLIIQGFKDAAEEAG---TSVTGGQTVLNPWIVLGGVATTVCQP
SPP00000108_1.0.1.genewise LGVSNKMTDRERDKVMPLIIQGFKDAAEEAG---TSVTGGQTVLNPWIVLGGVATTVCQP
SPP00000032_1.0 LGVSNKMTDRERDKVMPLIIQGFKDAAEEAG---TSVTGGQTVLNPWIVLGGVATTVCQP
SPP00000032_1.0.1.exonerate LGVSNKMTDRERDKVMPLIIQGFKDAAEEAG---TSVTGGQTVLNPWIVLGGVATTVCQP
SPP00000032_1.0.1.genewise LGVSNKMTDRERDKVMPLIIQGFKDAAEEAG---TSVTGGQTVLNPWIVLGGVATTVCQP
SPP00000055_1.0 LAVSTKMIEKERDVVIPLIMRGFKDSALEAG---TSVTGGHSVVNPWCTIGGVATTICQQ
SPP00000055_1.0.1.exonerate LGVSNKMTDRERDKVMPLIIQGFKDAAEEAG---TSVTGGQTVLNPWIVLGGVATTVCQP
SPP00000055_1.0.1.genewise LGVSNKMTDRERDKVMPLIIQGFKDAAEEAG---TSVTGGQTVLNPWIVLGGVATTVCQP
SPP00000072_1.0 LGVSNKMTDRERDKVMPLIIQGFKDAAEEAG---TSVTGGQTVLNPWIVLGGVATTVCQP
SPP00000072_1.0.1.exonerate LGVSNKMTDRERDKVMPLIIQGFKDAAEEAG---TSVTGGQTVLNPWIVLGGVATTVCQP
SPP00000072_1.0.1.genewise LGVSNKMTDRERDKVMPLIIQGFKDAAEEAG---TSVTGGQTVLNPWIVLGGVATTVCQP
SPP00000107_1.0 LGVSNKMTDRERDKVIPLIIQGFKDAAEEAG---TSVTGGQTVLNPWIVLGGVATTVCQP
SPP00000107_1.0.1.exonerate LGVSNKMTDRERDKVMPLIIQGFKDAAEEAG---TSVTGGQTVLNPWIVLGGVATTVCQP
SPP00000107_1.0.1.genewise LGVSNKMTDRERDKVMPLIIQGFKDAAEEAG---TSVTGGQTVLNPWIVLGGVATTVCQP
SPP00000047_1.0 LAVSTKMTEKERDVVIPLIMRGFKDSALEAG---TTVTGGQSVVNPWCTIGGVASTICQP
SPP00000047_1.0.1.exonerate LGVSNKMTDRERDKVMPLIIQGFKDAAEEAG---TSVTGGQTVLNPWIVLGGVATTVCQP
SPP00000047_1.0.1.genewise LGVSNKMTDRERDKVMPLIIQGFKDAAEEAG---TSVTGGQTVLNPWIVLGGVATTVCQP
SPP00000056_1.0 VTAPTEFTEQEREVVVPMVMQGFLEAAKACN---APVQIGSIAENPWCVIGGAASAVCHR
SPP00000056_1.0.1.exonerate LGVSNKMTDRERDKVMPLIIQGFKDAAEEAG---TSVTGGQTVLNPWIVLGGVATTVCQP
SPP00000056_1.0.1.genewise LGVSNKMTDRERDKVMPLIIQGFKDAAEEAG---TSVTGGQTVLNPWIVLGGVATTVCQP
SPP00000048_1.0 VSTSTSFSEKERDVVIGLVMKGFQNSLKANGYRNTPLIIRQLKINPWCIIGGIATSVCRS
SPP00000048_1.0.1.exonerate LGVSNKMTDRERDKVMPLIIQGFKDAAEEAG---TSVTGGQTVLNPWIVLGGVATTVCQP
SPP00000048_1.0.1.genewise LGVSNKMTDRERDKVMPLIIQGFKDAAEEAG---TSVTGGQTVLNPWIVLGGVATTVCQP
: .. .: :.**: * ::::** :: . :.: *** :** *: :*:
SPP00000033_1.0 NEFIMPDSAVVGDVLVLTKPLGTQVAVNAHQW-LDN--PERWNKVKMVVSREEVELAYQE
SPP00000033_1.0.1.exonerate NEFIMPDNAVPGDVLVLTKPLGTQVAVAVHQW-LDI--PEKWNKIKLVVTQEDVELAYQE
SPP00000033_1.0.1.genewise NEFIMPDNAVPGDVLVLTKPLGTQVAVAVHQW-LDI--PEKWNKIKLVVTQEDVELAYQE
SPP00000073_1.0 NEFIMPDSAVVGDVLVLTKPLGTQVAVNAHQW-LDN--PERWNKVKMVVSREEVELAYQE
SPP00000073_1.0.1.exonerate NEFIMPDNAVPGDVLVLTKPLGTQVAVAVHQW-LDI--PEKWNKIKLVVTQEDVELAYQE
SPP00000073_1.0.1.genewise NEFIMPDNAVPGDVLVLTKPLGTQVAVAVHQW-LDI--PEKWNKIKLVVTQEDVELAYQE
SPP00000108_1.0 NEFIMPDSAVVGDVLVLTKPLGTQVAANAHQW-LDN--PEKWNKIKMVVSREEVELAYQE
SPP00000108_1.0.1.exonerate NEFIMPDNAVPGDVLVLTKPLGTQVAVAVHQW-LDI--PEKWNKIKLVVTQEDVELAYQE
SPP00000108_1.0.1.genewise NEFIMPDNAVPGDVLVLTKPLGTQVAVAVHQW-LDI--PEKWNKIKLVVTQEDVELAYQE
SPP00000032_1.0 NEFIMPDNAVPGDVLVLTKPLGTQVAVAVHQW-LDI--PEKWNKIKLVVTQEDVELAYQE
SPP00000032_1.0.1.exonerate NEFIMPDNAVPGDVLVLTKPLGTQVAVAVHQW-LDI--PEKWNKIKLVVTQEDVELAYQE
SPP00000032_1.0.1.genewise NEFIMPDNAVPGDVLVLTKPLGTQVAVAVHQW-LDI--PEKWNKIKLVVTQEDVELAYQE
SPP00000055_1.0 NEFIVPDNAVVGDVLVLTKALGTQVAVNAHQW-LDQ--SERWNRIKLVVSEEDVRKAYHR
SPP00000055_1.0.1.exonerate NEFIMPDNAVPGDVLVLTKPLGTQVAVAVHQW-LDI--PEKWNKIKLVVTQEDVELAYQE
SPP00000055_1.0.1.genewise NEFIMPDNAVPGDVLVLTKPLGTQVAVAVHQW-LDI--VKKWNKIKLVVTQEDVELAYQE
SPP00000072_1.0 NEFIMPDNAVPGDVLVLTKPLGTQVAVAVHQW-LDI--PEKWNKIKLVVTQEDVELAYQE
SPP00000072_1.0.1.exonerate NEFIMPDNAVPGDVLVLTKPLGTQVAVAVHQW-LDI--PEKWNKIKLVVTQEDVELAYQE
SPP00000072_1.0.1.genewise NEFIMPDNAVPGDVLVLTKPLGTQVAVAVHQW-LDI--PEKWNKIKLVVTQEDVELAYQE
SPP00000107_1.0 NEFIMPDNAVPGDVLVLTKPLGTQVAVAVHQW-LDI--PEKWNKIKLVVTQEDVELAYQE
SPP00000107_1.0.1.exonerate NEFIMPDNAVPGDVLVLTKPLGTQVAVAVHQW-LDI--PEKWNKIKLVVTQEDVELAYQE
SPP00000107_1.0.1.genewise NEFIMPDNAVPGDVLVLTKPLGTQVAVAVHQW-LDI--PEKWNKIKLVVTQEDVELAYQE
SPP00000047_1.0 NEYIVPDNAVVGDVLVLTKPLGTQVAVNAHQW-IDQ--PERWNRIKLVVSEEDVRKAYHR
SPP00000047_1.0.1.exonerate NEFIMPDNAVPGDVLVLTKPLGTQVAVAVHQW-LDI--PEKWNKIKLVVTQEDVELAYQE
SPP00000047_1.0.1.genewise NEFIMPDNAVPGDVLVLTKPLGTQVAVAVHQW-LDI--PEKWNKIKLVVTQEDVELAYQE
SPP00000056_1.0 SELIMPYNAQPGDALVLTKPLGTQLATNAYIW-MGEQQSDSWAQLRERFTVADIEQTYRI
SPP00000056_1.0.1.exonerate NEFIMPDNAVPGDVLVLTKPLGTQVAVAVHQW-LDIAQPEKWNKIKLVVTQEDVELAYQE
SPP00000056_1.0.1.genewise NEFIMPDNAVPGDVLVLTKPLGTQVAVAVHQW-LDI--VKKWNKIKLVVTQEDVELAYQE
SPP00000048_1.0 EEIILPSNAQPGDVLVLTKPLGGQMAMDAHLWQLNQ--TEKYKKLLSECSDADIKETFEI
SPP00000048_1.0.1.exonerate NEFIMPDNAVPGDVLVLTKPLGTQVAVAVHQW-LDI--PEKWNKIKLVVTQEDVELAYQE
SPP00000048_1.0.1.genewise NEFIMPDNAVPGDVLVLTKPLGTQVAVAVHQW-LDI--VKKWNKIKLVVTQEDVELAYQE
.* *:* .* **.*****.** *:* .: * :. . : :: : ::. ::.
SPP00000033_1.0 AMFNMATLNRTAAGLMHTFNAHAATDITGFGILGHSQNLAKQQRNEVSFVIHNLPIIAKM
SPP00000033_1.0.1.exonerate AMMNMARLNRTAAGLMHTFNAHAATDITGFGILGHAQNLAKQQRNEVSFVIHNLPVLAKM
SPP00000033_1.0.1.genewise AMMNMARLNRTAAGLMHTFNAHAATDITGFGILGHAQNLAKQQRNEVSFVIHNLPVLAKM
SPP00000073_1.0 AMFNMATLNRTAAGLMHTFNAHAATDITGFGILGHSQNLAKQQRNEVSFVIHNLPIIAKM
SPP00000073_1.0.1.exonerate AMMNMARLNRTAAGLMHTFNAHAATDITGFGILGHAQNLAKQQRNEVSFVIHNLPVLAKM
SPP00000073_1.0.1.genewise AMMNMARLNRTAAGLMHTFNAHAATDITGFGILGHAQNLAKQQRNEVSFVIHNLPVLAKM
SPP00000108_1.0 AMFNMATLNRTAAGLMHTFNAHAATDITGFGILGHSQNLAKQQKNEVSFVIHNLPIIAKM
SPP00000108_1.0.1.exonerate AMMNMARLNRTAAGLMHTFNAHAATDITGFGILGHAQNLAKQQRNEVSFVIHNLPVLAKM
SPP00000108_1.0.1.genewise AMMNMARLNRTAAGLMHTFNAHAATDITGFGILGHAQNLAKQQRNEVSFVIHNLPVLAKM
SPP00000032_1.0 AMMNMARLNRTAAGLMHTFNAHAATDITGFGILGHAQNLAKQQRNEVSFVIHNLPVLAKM
SPP00000032_1.0.1.exonerate AMMNMARLNRTAAGLMHTFNAHAATDITGFGILGHAQNLAKQQRNEVSFVIHNLPVLAKM
SPP00000032_1.0.1.genewise AMMNMARLNRTAAGLMHTFNAHAATDITGFGILGHAQNLAKQQRNEVSFVIHNLPVLAKM
SPP00000055_1.0 AMDSMSRLNRVAARLMHKYNAHGATDVTGFGLLGHAQTLASHQKNEVSFVIHNLPVIAKM
SPP00000055_1.0.1.exonerate AMMNMARLNRTAAGLMHTFNAHAATDITGFGILGHAQNLAKQQRNEVSFVIHNLPVLAKM
SPP00000055_1.0.1.genewise AMMNMARLNRTAAGLMHTFNAHAATDITGFGILGHAQNLAKQQRNEVSFVIHNLPVLAKM
SPP00000072_1.0 AMMNMARLNRTAAGLMHTFNAHAATDITGFGILGHAQNLAKQQRNEVSFVIHNLPVLAKM
SPP00000072_1.0.1.exonerate AMMNMARLNRTAAGLMHTFNAHAATDITGFGILGHAQNLAKQQRNEVSFVIHNLPVLAKM
SPP00000072_1.0.1.genewise AMMNMARLNRTAAGLMHTFNAHAATDITGFGILGHAQNLAKQQRNEVSFVIHNLPVLAKM
SPP00000107_1.0 AMMNMARLNRTAAGLMHTFNAHAATDITGFGILGHAQNLAKQQRNEVSFVIHNLPVLAKM
SPP00000107_1.0.1.exonerate AMMNMARLNRTAAGLMHTFNAHAATDITGFGILGHAQNLAKQQRNEVSFVIHNLPVLAKM
SPP00000107_1.0.1.genewise AMMNMARLNRTAAGLMHTFNAHAATDITGFGILGHAQNLAKQQRNEVSFVIHNLPVLAKM
SPP00000047_1.0 AMNSMARLNRVAARLMHKYNAHGATDITGFGLLGHAQTLAAHQKKDVSFVIHNLPVIAKM
SPP00000047_1.0.1.exonerate AMMNMARLNRTAAGLMHTFNAHAATDITGFGILGHAQNLAKQQRNEVSFVIHNLPVLAKM
SPP00000047_1.0.1.genewise AMMNMARLNRTAAGLMHTFNAHAATDITGFGILGHAQNLAKQQRNEVSFVIHNLPVLAKM
SPP00000056_1.0 ALESMSRLNKTGAELMKKYGAHAATDVTGFGLYGHAENLASHQTADVDFHLDTLPIIKNV
SPP00000056_1.0.1.exonerate AMMNMARLNRTAAGLMHTFNAHAATDITGFGILGHAQNLAKQQRNEVSFVIHNLPVLAKM
SPP00000056_1.0.1.genewise AMMNMARLNRTAAGLMHTFNAHAATDITGFGILGHAQNLAKQQRNEVSFVIHNLPVLAKM
SPP00000048_1.0 AVKSMTYLNKNAALLMHKYQAHCATDITGFGLLGHANNLAQFQKEKVLFQINKLPIIKNV
SPP00000048_1.0.1.exonerate AMMNMARLNRTAAGLMHTFNAHAATDITGFGILGHAQNLAKQQRNEVSFVIHNLPVLAKM
SPP00000048_1.0.1.genewise AMMNMARLNRTAAGLMHTFNAHAATDITGFGILGHAQNLAKQQRNEVSFVIHNLPVLAKM
*: .*: **: .* **:.: ** ***:****: **::.** * .* * :..**:: ::
SPP00000033_1.0 AAVSKASGR-FGLLQGTSAETSGGLLICLPREQAARFCSEIKSSKYGEGHQAWIVGIVEK
SPP00000033_1.0.1.exonerate AAVSKACGNMFGLMHGTCPETSGGLLICLPREQAARFCAEIKSPKYGEGHQAWIIGIVEK
SPP00000033_1.0.1.genewise AAVSKACGNMFGLMHGTCPETSGGLLICLPREQAARFCAEIKSPKYGEGHQAWIIGIVEK
SPP00000073_1.0 AAVSKASGR-FGLLQGTSAETSGGLLICLPREQAARFCSEIKSSKYGEGHQAWIVGIVEK
SPP00000073_1.0.1.exonerate AAVSKACGNMFGLMHGTCPETSGGLLICLPREQAARFCAEIKSPKYGEGHQAWIIGIVEK
SPP00000073_1.0.1.genewise AAVSKACGNMFGLMHGTCPETSGGLLICLPREQAARFCAEIKSPKYGEGHQAWIIGIVEK
SPP00000108_1.0 AAISKASGR-FGLLQGTSAETSGGLLICLPREQAARFCSEIKSSKYGEGHQAWIVGIVEK
SPP00000108_1.0.1.exonerate AAVSKACGNMFGLMHGTCPETSGGLLICLPREQAARFCAEIKSPKYGEGHQAWIIGIVEK
SPP00000108_1.0.1.genewise AAVSKACGNMFGLMHGTCPETSGGLLICLPREQAARFCAEIKSPKYGEGHQAWIIGIVEK
SPP00000032_1.0 AAVSKACGNMFGLMHGTCPETSGGLLICLPREQAARFCAEIKSPKYGEGHQAWIIGIVEK
SPP00000032_1.0.1.exonerate AAVSKACGNMFGLMHGTCPETSGGLLICLPREQAARFCAEIKSPKYGEGHQAWIIGIVEK
SPP00000032_1.0.1.genewise AAVSKACGNMFGLMHGTCPETSGGLLICLPREQAARFCAEIKSPKYGEGHQAWIIGIVEK
SPP00000055_1.0 AAVAKACGNMFQLLQGHSAETSGGLLICLPREQAAAYCKDIEK---QEGCQAWIIGIVEK
SPP00000055_1.0.1.exonerate AAVSKACGNMFGLMHGTCPETSGGLLICLPREQAARFCAEIKSPKYGEGHQAWIIGIVEK
SPP00000055_1.0.1.genewise AAVSKACGNMFGLMHGTCPETSGGLLICLPREQAARFCAEIKSPKYGEGHQAWIIGIVEK
SPP00000072_1.0 AAVSKACGNMFGLMHGTCPETSGGLLICLPREQAARFCAEIKSPKYGEGHQAWIIGIVEK
SPP00000072_1.0.1.exonerate AAVSKACGNMFGLMHGTCPETSGGLLICLPREQAARFCAEIKSPKYGEGHQAWIIGIVEK
SPP00000072_1.0.1.genewise AAVSKACGNMFGLMHGTCPETSGGLLICLPREQAARFCAEIKSPKYGEGHQAWIIGIVEK
SPP00000107_1.0 AAVSKACGNMFGLMHGTCPETSGGLLICLPREQAARFCAEIKSPKYGEGHQAWIIGIVEK
SPP00000107_1.0.1.exonerate AAVSKACGNMFGLMHGTCPETSGGLLICLPREQAARFCAEIKSPKYGEGHQAWIIGIVEK
SPP00000107_1.0.1.genewise AAVSKACGNMFGLMHGTCPETSGGLLICLPREQAARFCAEIKSPKYGEGHQAWIIGIVEK
SPP00000047_1.0 AAVAKACGNMFQLLQGHSAETSGGLLICLPREQAAAYCKDIEK---QEGYQAWIIGIVEK
SPP00000047_1.0.1.exonerate AAVSKACGNMFGLMHGTCPETSGGLLICLPREQAARFCAEIKSPKYGEGHQAWIIGIVEK
SPP00000047_1.0.1.genewise AAVSKACGNMFGLMHGTCPETSGGLLICLPREQAARFCAEIKSPKYGEGHQAWIIGIVEK
SPP00000056_1.0 REIAETLGRGAKLLAGKAVETSGGLLICLPREAAAGFCEEYRRC---TKHEAWIVGHVEK
SPP00000056_1.0.1.exonerate AAVSKACGNMFGLMHGTCPETSGGLLICLPREQAARFCAEIKSPKYGEGHQAWIIGIVEK
SPP00000056_1.0.1.genewise AAVSKACGNMFGLMHGTCPETSGGLLICLPREQAARFCAEIKSPKYGEGHQAWIIGIVEK
SPP00000048_1.0 LKFSTLVGQSTKFRSGRSVETSGGLLICLPADAADKFCRDFEEATNGE-QKSFQIGHVTA
SPP00000048_1.0.1.exonerate AAVSKACGNMFGLMHGTCPETSGGLLICLPREQAARFCAEIKSPKYGEGHQAWIIGIVEK
SPP00000048_1.0.1.genewise AAVSKACGNMFGLMHGTCPETSGGLLICLPREQAARFCAEIKSPKYGEGHQAWIIGIVEK
.: *. : * . *********** : * :* : . ::: :* *
SPP00000033_1.0 GNRTAR-IIDKPRVIEVLPRGATAAV-LAPDSSNASSEPSS
SPP00000033_1.0.1.exonerate GNRTAR-IIDKPRIIEVAPQVATQNN-LSPF-MNGETSSPS
SPP00000033_1.0.1.genewise GNRTAR-IIDKPRIIEVAPQVATQN---------------V
SPP00000073_1.0 GNRTAR-IIDKPRVIEVLPRGATAAV-LAPDSSNASSEPSS
SPP00000073_1.0.1.exonerate GNRTAR-IIDKPRIIEVAPQVATQNN-LSPF-MNGETSSPS
SPP00000073_1.0.1.genewise GNRTAR-IIDKPRIIEVAPQVATQN---------------V
SPP00000108_1.0 GNRTAR-IIDKPRVIEVLPRGASAAAAAAPDNSNAASEPSS
SPP00000108_1.0.1.exonerate GNRTAR-IIDKPRIIEVAPQVATQNV-------NP----TP
SPP00000108_1.0.1.genewise GNRTAR-IIDKPRIIEVAPQVA------------------T
SPP00000032_1.0 GNRTAR-IIDKPRIIEVAPQVATQNV-------NPTPGATS
SPP00000032_1.0.1.exonerate GNRTAR-IIDKPRIIEVAPQVATQNV-------NPTPGATS
SPP00000032_1.0.1.genewise GNRTAR-IIDKPRIIEVAPQVATQNV-------NPTPGATS
SPP00000055_1.0 GSRTAR-IIDKPRVIEVP--------------------AKD
SPP00000055_1.0.1.exonerate GNRTAR-IIDKPRIIE------------------------V
SPP00000055_1.0.1.genewise GNRTAR-IIDKPRIIE------------------------V
SPP00000072_1.0 GNRTAR-IIDKPRIIEVAPQVATQNV-------NPTPGATS
SPP00000072_1.0.1.exonerate GNRTAR-IIDKPRIIEVAPQVATQNV-------NPTPGATS
SPP00000072_1.0.1.genewise GNRTAR-IIDKPRIIEVAPQVATQNV-------NPTPGATS
SPP00000107_1.0 GNRTAR-IIDKPRIIEVAPQVATQNV-------NPTPGATS
SPP00000107_1.0.1.exonerate GNRTAR-IIDKPRIIEVAPQVATQNV-------NPTPGATS
SPP00000107_1.0.1.genewise GNRTAR-IIDKPRIIEVAPQVATQNV-------NPTPGATS
SPP00000047_1.0 GNKTAR-IIDKPRVIEVP--------------------AKD
SPP00000047_1.0.1.exonerate GNRTAR-IIDKPRIIE------------------------V
SPP00000047_1.0.1.genewise GNRTAR-IIDKPRIIE------------------------V
SPP00000056_1.0 GARGVK-MNPNLNILSV-----------------------E
SPP00000056_1.0.1.exonerate GNRTAR-IIDKPRIIE------------------------V
SPP00000056_1.0.1.genewise GNRTAR-IIDKPRIIE------------------------V
SPP00000048_1.0 ANESDAVLCEDVEFIEVS----------------------L
SPP00000048_1.0.1.exonerate GNRTAR-IIDKPRIIEV-----------------------A
SPP00000048_1.0.1.genewise GNRTAR-I--------------------------------I
. . :
......................................................................................................................................................................................................................................................
BEST PAIRWISE ALIGNMENT
CLUSTAL FORMAT for T-COFFEE Version_7.54, SCORE=100, Nseq=2, Len=392
SPP00000032_1.0 MSTRESFNPESYELDKSFRLTRFTELKGTGCKVPQDVLQKLLESLQENHFQEDEQFLGAV
SPP00000032_1.0.1.genewise MSVRETFNPESYELDKSFRLTRFTELKGTGCKVPQDVLQKLLESLQENHFQEDEQFLGAV
**.**:******************************************************
SPP00000032_1.0 MPRLGIGMDTCVIPLRHGGLSLVQTTDYIYPIVDDPYMMGRIACANVLSDLYAMGVTECD
SPP00000032_1.0.1.genewise MPRLGIGMDTCVIPLRHGGLSLVQTTDYIYPIVDDPYMMGRIACANVLSDLYAMGVTECD
************************************************************
SPP00000032_1.0 NMLMLLGVSNKMTDRERDKVMPLIIQGFKDAAEEAGTSVTGGQTVLNPWIVLGGVATTVC
SPP00000032_1.0.1.genewise NMLMLLGVSNKMTDRERDKVMPLIIQGFKDAAEEAGTSVTGGQTVLNPWIVLGGVATTVC
************************************************************
SPP00000032_1.0 QPNEFIMPDNAVPGDVLVLTKPLGTQVAVAVHQWLDIPEKWNKIKLVVTQEDVELAYQEA
SPP00000032_1.0.1.genewise QPNEFIMPDNAVPGDVLVLTKPLGTQVAVAVHQWLDIPEKWNKIKLVVTQEDVELAYQEA
************************************************************
SPP00000032_1.0 MMNMARLNRTAAGLMHTFNAHAATDITGFGILGHAQNLAKQQRNEVSFVIHNLPVLAKMA
SPP00000032_1.0.1.genewise MMNMARLNRTAAGLMHTFNAHAATDITGFGILGHAQNLAKQQRNEVSFVIHNLPVLAKMA
************************************************************
SPP00000032_1.0 AVSKACGNMFGLMHGTCPETSGGLLICLPREQAARFCAEIKSPKYGEGHQAWIIGIVEKG
SPP00000032_1.0.1.genewise AVSKACGNMFGLMHGTCPETSGGLLICLPREQAARFCAEIKSPKYGEGHQAWIIGIVEKG
************************************************************
SPP00000032_1.0 NRTARIIDKPRIIEVAPQVATQNVNPTPGATS
SPP00000032_1.0.1.genewise NRTARIIDKPRIIEVAPQVATQNVNPTPGATS
********************************
......................................................................................................................................................................................................................................................
RESULTADOS DEL Selenoprofiles
Output_id: SPS.2.threonine
---------- ---------------
-Species Meleagris gallopavo -Taxid 9103
-Target /homes/users/U63748/gallopavo.fa
-Chromosome (+) 1
-Program exonerate
-Query name gi|73949038|ref|XP_857465.1| PREDICTED: similar to selenophosphate synthetase isoform 5 [Canis familiaris]
-Query range 1-397 length:397 coverage: 1.0
-Profile range 1-1549 length:1549 coverage: 1.0 sec_position: [696]
-Average sequence identity with profile: 0.2728 (ignoring gaps: 0.3619)
-State kept
------- alignment -------
Query MSTRESFNPESYELDKSFRLTRFTELKGUGCKVPQDVLQKLLESLQENHFQEDEQFLGAVMPRLG <---Intron---> IGMDTCVIPLRHGGLSLVQ
|| ||/|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| < 3041bp > |||||||||||||||||||
Target MSVRETFNPESYELDKSFRLTRFTELKGTGCKVPQDVLQKLLESLQENHFQEDEQFLGAVMPRLG IGMDTCVIPLRHGGLSLVQ
atgcgatacgatgcgaatctactagcagagtagccggtcaccgtccgactcgggctcgggacacg agagatgactacggtttgc
tctgactacagaataagtgtcgtcatagcggatcaattaattactaaaataaaaattgcttcgt gtgtacgttctgaggtctta
gttagatcagccagcgcccgcccggggcaccagtgtcagggcataaacttgatagcggacgcgg acggcgtttaaatatgggtg
*
Query TTDYIYPIVDDPYMM <---Intron---> GRIACANVLSDLYAMGVTECDNMLMLLGISNKMTDR <---Intron---> ERDKVMPLIIQGFKDAA
||||||||||||||| < 3417bp > ||||||||||||||||||||||||||||/||||||| < 837bp > |||||||||||||||||
Target TTDYIYPIVDDPYMM GRIACANVLSDLYAMGVTECDNMLMLLGVSNKMTDR ERDKVMPLIIQGFKDAA
aagtatcagggctaa gcagtgagtagctgaggagtgaataccggaaaaaga gagagaccaacgtaggg
ccaatacttaacatt ggtcgcattgatactgtcagaatttttgtgaatcag agaattctttagtaacc
aattttttgttttgg agaatctcatcttcggcaacccgggctacctagacg aacaggaatcgtcataa
Query EEAGTSVTGGQTVLNPWIVLGGVATTVCQPNEFIM <---Intron---> PDNAVPGDVLVLTKPLGTQVAVAVHQWLDI <---Intron---> KRG
||||||||||||||||||||||||||||||||||| < 822bp > |||||||||||||||||||||||||||||| < 3318bp >
Target EEAGTSVTGGQTVLNPWIVLGGVATTVCQPNEFIM PDNAVPGDVLVLTKPLGTQVAVAVHQWLDI HPL
ggggatgaggcagtactagtggggaagtccagtaa cgaggcgggcgtaactgacgggggcctcga cct
aacgcctcggacttacgtttggtccctgacaattt caactcgattttcactgcatctctaagtat act
aaaaattttcaagatcgttaaagcaactgttata gactagaatgtaatacgaaagtacccggatt taa
Query GLKIEKLHGSASNEAPKTLLAYQEAMMNMARLNR <---Intron---> TAAGLMHTFNAHAATDITGFGILGHAQNLAKQQRNEVSFVIHNLPVLAKM
|/|/ | / /| / | | < 1615bp > |||||||||||||||||||||||||||||||||||||||||||||||||
Target ARKMEQNQTSGNTGRCRTSIPGSNDEYGKAESNS EAAGLMHTFNAHAATDITGFGILGHAQNLAKQQRNEVSFVIHNLPVLAKM
gaaagcacaagaagataaaacgaaggtgaggtaa ggggcacatagcggagaagtgacgcgcacgacccaggttgacaccgcgaa
cgataaaacggacggggcgtcggaaaagacacag accgttactacacccatcgtgttgacaatcaaagaatctttaatcttcat
caagaatatttcaaatatcaaacttatcgtagc tattatgctctatatgccaatacgataactcgggatggcttttttttttgg
Query AAVSKACGNMFGLMHGTCPETSG <---Intron---> GLLICLPREQAARFCAEIKSPKYGEGHQAWIIGIVEKGNRTARIIDKPRIIEVAPQVATQN
||||||||||||||||||||||| < 5406bp > |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Target AAVSKACGNMFGLMHGTCPETSG GLLICLPREQAARFCAEIKSPKYGEGHQAWIIGIVEKGNRTARIIDKPRIIEVAPQVATQN
gggaagtgaatgcacgatcgatg gccattccgcggcttggaatcatgggccgtaagaggagacagaaagaccaagggccggaca
cctgacggattgttagcgcacc ggtttgtcgaaccgtgcataccaagagaacgttgttaagagccgttaacgttatccatccaa
ttctgttctgtctgtgttagta atctctaaaagaatctcgcgtaaccatcaagttctaggcccgcacacaaactataaggctgc
Query VNPTPGATS
|||||||||
Target VNPTPGATS
gacacggat
tacccgccc
gcggttcct
------- positions -------
Exon 1 8220148 8220340
Exon 2 8223382 8223485
Exon 3 8226903 8227010
Exon 4 8227848 8228002
Exon 5 8228825 8228915
Exon 6 8232234 8232343
Exon 7 8233959 8234176
Exon 8 8239583 8239794
--------- SECIS ---------
>SPS.2.threonine.esecis:loosest.1 chromosome:1 strand:+ positions:8241561-8241669 species:"Meleagris gallopavo"
target:/homes/users/U63748/gallopavo.fa distance_from_sec_uga:None distance_from_cds:1766
CUAUUACUCC UUUGGUU GAUUCUGCAAGCU GUGAU GUCCCAUGGU AA UCUAGAAUAUCUCCUGCAUGUCAG GACUGGGGAC AGAU AGGUUAU CUCCAAA UCUGUUUUCC
.......... (((((.. (((......(((( .(((( (((((..(.. .. ...........(((((.....))) )))..))))) )))) .)))))) ).))))) ..........
--------- 3' seq --------
Total sequence length available downstream >= 3000
Sequence until first stop codon:
TAA
*
......................................................................................................................................................................................................................................................