SELENOPROTEÍNAS DE Meleagris gallopavo
PROTEIN REPORT FOR Selenoprotein T (SelT)
| DESCRIPCIÓN | Selenoproteína. 22(-):11472492...11472511. |
| SELENOPROFILES | Elección: blast. Elemento SECIS predicho (strand:- positions:11469648-11469748). |
| COMENTARIOS | Esta es una selenoproteína que nosotros no hemos podido identificar pero Selenoprofiles sí. |
RESULTADOS DEL Selenoprofiles
Output_id: SelT.4.selenocysteine
---------- ---------------------
-Species Meleagris gallopavo -Taxid 9103
-Target /homes/users/U63748/gallopavo.fa
-Chromosome (-) 22
-Program blast
-Query name BLAST_QUERY_MASTER
-Query range 137-217 length:301 coverage: 0.27
-Profile range 279-360 length:488 coverage: 0.17 sec_position: [282]
-Average sequence identity with profile: 0.1744 (ignoring gaps: 0.1975)
-State kept
------- alignment -------
Query CVSUGYRRAFEQYKRILEEKYPGEIQQQQKGKKPELRIEGE <---Intron---> NYPP-PALKRLL---AKVLSVAKLGLIGLILAGDDPFAYLPGE
| |||/ / || /|| // / < 18bp > | || |/ /|| | || |
Target CPSUGWHGTAQGCVAILCSRYPS-----------TTEVQCQ PYRAGCPALDLLGAGGKLCPGEQLGCSVLNLAFPSLAALP-C-
tcttgtcgagcgtggactaatct-----------aaggctc ctaggtcgcgccggggactcggccgtagcacgtctcggcc-t-
gccgggagccaggtcttgggacc-----------ccataga cagcggcctattgcggatgcgaatgggttatctcctcctc-g-
cacacgtctcggtactcccgtgc-----------atgagtg ttacgcatgtgtgttgggcttggggctcgttccacgaagc-c-
*
Query G
Target R
a
g
g
------- positions -------
Exon 1 11472511 11472600
Exon 2 11472367 11472492
--------- SECIS ---------
>SelT.4.selenocysteine.esecis:loosest.1 chromosome:22 strand:- positions:11469648-11469748 species:"Meleagris gallopavo"
target:/homes/users/U63748/gallopavo.fa distance_from_sec_uga:2822 distance_from_cds:2618
AUUGAAGUAA GGGCCUC CAUCUUCAUACA GUGAG CUGAGGAUGGUG AA GCAGUGCUGUCACC CCUCUCCUUGC AGGAA CUGAACU GAUUUC CCCCUAGCUC
.....(((.( (((.... .....(((..(( .(((( .((((((.(((( .. (((....))))))) ....)))))). .)))) .))...) )).... .)))).))).
--------- 3' seq --------
Total sequence length available downstream >= 3000
Sequence until first stop codon:
GGTTTAACAAGCAGCAGCTGCTGGGAACGTGCCAGCTGGCAGCATGTGCTCATGTGGCCAGGCTGGCTGCTTAGATTTGCATAA
G L T S S S C W E R A S W Q H V L M W P G W L L R F A *
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