SELENOPROTEÍNAS DE Meleagris gallopavo
PROTEIN REPORT FOR Glutathione peroxidase 4 (GPx 4)
| DESCRIPCIÓN | Selenoproteína. 30(+):2516312...2516800. |
| SECISearch | Sin resultados. |
| SELENOPROFILES | Encontrada. Elección: Blast. Elemento SECIS no predicho |
| COMENTARIOS | Elección: Genewise. Esta es una proteína de la família de las GPx. Por homología de secuencia hemos determinado que se trata de GPx4 pero no lo podemos afirmar con rotundidad ya que esta decisión está basada en el SCORE de los pairwise-alignments realizados con t_coffee (hemos visto que no siempre nos dan resultados con sentido biológico). Aún así, en este caso se coincide con la anotación del gen en NCBI, respaldando nuestro resultado. |
1. ALINEAMIENTO MÚLTIPLE DE TODOS LOS HOMÓLOGOS DE SELENODB
2. BEST PAIRWISE ALIGNMENT
4. RESULTADOS DEL Selenoprofiles
ALINEAMIENTO MÚLTIPLE DE TODOS LOS HOMÓLOGOS DE SELENODB
CLUSTAL FORMAT for T-COFFEE Version_7.54, SCORE=65, Nseq=51, Len=299
SPP00000004_1.0 MCAA--------------------------------------------------------
SPP00000004_1.0.30.exonerate S-----------------------------------------------------------
SPP00000004_1.0.30.genewise ------------------------------------------------------------
SPP00000065_1.0 MCAA--------------------------------------------------------
SPP00000065_1.0.30.exonerate S-----------------------------------------------------------
SPP00000065_1.0.30.genewise ------------------------------------------------------------
SPP00000098_1.0 MCAA--------------------------------------------------------
SPP00000098_1.0.30.exonerate CGA---------V--------------------------------VS-------------
SPP00000098_1.0.30.genewise ------------------------------------------------------------
SPP00000005_1.0 MA----------------------------------------------------------
SPP00000005_1.0.30.exonerate ------------------------------------------------------------
SPP00000005_1.0.30.genewise ------------------------------------------------------------
SPP00000007_1.0 MSLGRLCRLLKPA--------------------------------LLCG-----------
SPP00000007_1.0.30.exonerate ------------------------------------------------------------
SPP00000007_1.0.30.genewise ------------------------------------------------------------
SPP00000010_1.0 MVAATV------------------------------------------------------
SPP00000010_1.0.30.exonerate ------------------------------------------------------------
SPP00000010_1.0.30.genewise ------------------------------------------------------------
SPP00000011_1.0 MEPLAA-----YP--------------------------------LKCSGPRAKVFAVLL
SPP00000011_1.0.30.exonerate ------------------------------------------------------------
SPP00000011_1.0.30.genewise ------------------------------------------------------------
SPP00000066_1.0 MA----------------------------------------------------------
SPP00000066_1.0.30.exonerate ------------------------------------------------------------
SPP00000066_1.0.30.genewise ------------------------------------------------------------
SPP00000068_1.0 MSLGRLCRLLKPA--------------------------------LLCG-----------
SPP00000068_1.0.30.exonerate ------------------------------------------------------------
SPP00000068_1.0.30.genewise ------------------------------------------------------------
SPP00000071_1.0 MVAATV------------------------------------------------------
SPP00000071_1.0.30.exonerate ------------------------------------------------------------
SPP00000071_1.0.30.genewise ------------------------------------------------------------
SPP00000082_1.0 M-----------------------------------------------------------
SPP00000082_1.0.30.exonerate ------------------------------------------------------------
SPP00000082_1.0.30.genewise ------------------------------------------------------------
SPP00000086_1.0 MSLRQFQNISRQALRCYSMRRTPGPVLELSRGQRQCLRLCTIMLPVSCAATP-------M
SPP00000086_1.0.30.exonerate CHKKCL---ETLA--------------------------------IQCGHKK-------L
SPP00000086_1.0.30.genewise ------------------------------------------------------------
SPP00000094_1.0 M-----------------------------------------------------------
SPP00000094_1.0.30.exonerate ------------------------------------------------------------
SPP00000094_1.0.30.genewise ------------------------------------------------------------
SPP00000095_1.0 M-----------------------------------------------------------
SPP00000095_1.0.30.exonerate ------------------------------------------------------------
SPP00000095_1.0.30.genewise ------------------------------------------------------------
SPP00000099_1.0 MA----------------------------------------------------------
SPP00000099_1.0.30.exonerate ------------------------------------------------------------
SPP00000099_1.0.30.genewise ------------------------------------------------------------
SPP00000101_1.0 MSWGRLSRLLKPA--------------------------------LLCG-----------
SPP00000101_1.0.30.exonerate ------------------------------------------------------------
SPP00000101_1.0.30.genewise ------------------------------------------------------------
SPP00000104_1.0 MVAAV-------------------------------------------------------
SPP00000104_1.0.30.exonerate MGS---------A--------------------------------IT-------------
SPP00000104_1.0.30.genewise ------------------------------------------------------------
SPP00000004_1.0 --------------------RLAA---AAAAAQSVYAFSARPLAGGEPVSLGSLRGKVLL
SPP00000004_1.0.30.exonerate ----------------------------------VMALGHGVLGGAISLSLGSRRGFVCI
SPP00000004_1.0.30.genewise ------------------------------------------------------------
SPP00000065_1.0 --------------------RLAA-----AAAQSVYAFSARPLAGGEPVSLGSLRGKVLL
SPP00000065_1.0.30.exonerate ----------------------------------VMALGHGVLGGAISLSLGSRRGFVCI
SPP00000065_1.0.30.genewise ------------------------------------------------------------
SPP00000098_1.0 --------------------RLSA-----AAQSTVYAFSARPLTGGEPVSLGSLRGKVLL
SPP00000098_1.0.30.exonerate -G---------------------------VAESSHYGCSSCSTQGGHPRRPGSKGGFVCI
SPP00000098_1.0.30.genewise ------------------------------------------------------------
SPP00000005_1.0 -----------------------------FIAKSFYDLSAISL-DGEKVDFNTFRGRAVL
SPP00000005_1.0.30.exonerate ------------------------------------DLSALQRN-GFKVPLQSRRGFVCI
SPP00000005_1.0.30.genewise ------------------------------------------------------------
SPP00000007_1.0 -AL-AAPG---LAGT-MCASRD-----DWRCARSMHEFSAKDID-GHMVNLDKYRGFVCI
SPP00000007_1.0.30.exonerate ------------------------------------------------------RGFVCI
SPP00000007_1.0.30.genewise ------------------------------------------------------RGFVCI
SPP00000010_1.0 ----AAA------WL-LLWA--AA---CAQQEQDFYDFKAVNIR-GKLVSLEKYRGSVSL
SPP00000010_1.0.30.exonerate ------------------------------------------------------RGFVCI
SPP00000010_1.0.30.genewise ------------------------------------------------------------
SPP00000011_1.0 SIVLCTVT-----LF-LLQL--KF---LKPKINSFYAFEVKDAK-GRTVSLEKYKGKVSL
SPP00000011_1.0.30.exonerate ------------------------------------------------------RGFVCI
SPP00000011_1.0.30.genewise ------------------------------------------------------------
SPP00000066_1.0 -----------------------------FIAKSFYDLSAISL-DGEKVDFNTFRGRAVL
SPP00000066_1.0.30.exonerate ------------------------------------DLSALQRN-GFKVPLQSRRGFVCI
SPP00000066_1.0.30.genewise ------------------------------------------------------------
SPP00000068_1.0 -AL-AAPG---LAGT-MCASRD-----DWRCARSMHEFSAKDID-GHMVNLDKYRGFVCI
SPP00000068_1.0.30.exonerate ------------------------------------------------------RGFVCI
SPP00000068_1.0.30.genewise ------------------------------------------------------RGFVCI
SPP00000071_1.0 ----AAA------WL-LLWA--AA---CAQQEQDFYDFKAVNIR-GKLVSLEKYRGSVSL
SPP00000071_1.0.30.exonerate ------------------------------------------------------RGFVCI
SPP00000071_1.0.30.genewise ------------------------------------------------------------
SPP00000082_1.0 --------------------------------SSVYDFNVKNAN-GDDVSLSDYKGKVLI
SPP00000082_1.0.30.exonerate -----------------------------------------------------HRGFVCI
SPP00000082_1.0.30.genewise ------------------------------------------------------------
SPP00000086_1.0 NAI-SSAAQHSTAAAIDMSANG-----DYKNAASIYEFTVKDTH-GNDVSLEKYKGKVVL
SPP00000086_1.0.30.exonerate QAI-SLSI---SHNI-SCSSEVPAHGDTTRNAAPSLPFAAGEAA-GEREVARKEEGFVCI
SPP00000086_1.0.30.genewise ------------------------------------------------------------
SPP00000094_1.0 -------------------------------TTSFYDLECKDKK-GESFKFDQLKGKVVL
SPP00000094_1.0.30.exonerate ------------------------------------------ES-NHSWKMSNLWGFVCI
SPP00000094_1.0.30.genewise ------------------------------------------------------------
SPP00000095_1.0 --------------------------------SEFYKLAPVDKK-GQPFPFDQLKGKVVL
SPP00000095_1.0.30.exonerate -------------------------------------------------PATRIRGFVCI
SPP00000095_1.0.30.genewise ------------------------------------------------------------
SPP00000099_1.0 -----------------------------YIAKSFYDLSAVGL-DGEKIDFNTFRGRAVL
SPP00000099_1.0.30.exonerate ------------------------------------DLSALQRN-GFKVPLQSRRGFVCI
SPP00000099_1.0.30.genewise ------------------------------------------------------------
SPP00000101_1.0 -AL-AAPG---LAGT-MCASRD-----DWRCARSMHEFSAKDID-GHMVCLDKYRGFVCI
SPP00000101_1.0.30.exonerate ------------------------------------------------------RGFVCI
SPP00000101_1.0.30.genewise ------------------------------------------------------RGFVCI
SPP00000104_1.0 ----ATA------WL-LLWA--AA---CAQSEQDFYDFKAVNIR-GKLVSLEKYRGSVSL
SPP00000104_1.0.30.exonerate ----TWTS---SWAQ-SCT----------ETQTPTHILKRGRRR-GSSFSLQPHGGFVCI
SPP00000104_1.0.30.genewise ------------------------------------------------------------
SPP00000004_1.0 IENVASLUGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQ------ENAK--NEEIL
SPP00000004_1.0.30.exonerate VTNVASKUGKTAVNYTQLVDLHARYAEKGLRILAFPCNQFGKQVGTAEQEPGD--EAQIK
SPP00000004_1.0.30.genewise -------UGKTAVNYTQLVDLHARYAEKGLRILAFPCNQFGKQ------EPGD--EAQIK
SPP00000065_1.0 IENVASLUGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQ------ENAK--NEEIL
SPP00000065_1.0.30.exonerate VTNVASKUGKTAVNYTQLVDLHARYAEKGLRILAFPCNQFGKQVGTAEQEPGD--EAQIK
SPP00000065_1.0.30.genewise -------UGKTAVNYTQLVDLHARYAEKGLRILAFPCNQFGKQ------EPGD--EAQIK
SPP00000098_1.0 IENVASLUGTTIRDYTEMNDLQKRLGPRGLVVLGFPCNQFGHQ------ENGK--NEEIL
SPP00000098_1.0.30.exonerate VTNVASKUGKTAVNYTQLVDLHARYAEKGLRILAFPCNQFGKQVGTAEQEPGD--EAQIK
SPP00000098_1.0.30.genewise -------UGKTAVNYTQLVDLHARYAEKGLRILAFPCNQFGKQ------EPGD--EAQIK
SPP00000005_1.0 IENVASLUGTTTRDFTQLNELQCRFPR-RLVVLGFPCNQFGHQ------ENCQ--NEEIL
SPP00000005_1.0.30.exonerate VTNVASKUGKTAVNYTQLVDLHARYAEKGLRILAFPCNQFGKQVGTAEQEPGD--EAQIK
SPP00000005_1.0.30.genewise -------UGKTAVNYTQLVDLHARYAEKGLRILAFPCNQFGK------------------
SPP00000007_1.0 VTNVASQUGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQ------EPGS--NEEIK
SPP00000007_1.0.30.exonerate VTNVASKUGKTAVNYTQLVDLHARYAEKGLRILAFPCNQFGKQ------EPGD--EAQIK
SPP00000007_1.0.30.genewise VTNVASKUGKTAVNYTQLVDLHARYAEKGLRILAFPCNQFGKQ------EPGD--EAQIK
SPP00000010_1.0 VVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAFPCNQFGQQ------EPDS--NKEIE
SPP00000010_1.0.30.exonerate VTNVASKUGKTAVNYTQLVDLHARYAEKGLRILAFPCNQFGKQ------EPGD--EAQIK
SPP00000010_1.0.30.genewise -------UGKTAVNYTQLVDLHARYAEKGLRILAFPCNQFGKQ------EPGD--EAQIK
SPP00000011_1.0 VVNVASDCQLTDRNYLGLKELHKEFGPSHFSVLAFPCNQFGES------EPRP--SKEVE
SPP00000011_1.0.30.exonerate VTNVASKUGKTAVNYTQLVDLHARYAEKGLRILAFPCNQFGKQ------EPGD--EAQIK
SPP00000011_1.0.30.genewise -------------NYTQLVDLHARYAEKGLRILAFPCNQFGKQ------EPGD--EAQIK
SPP00000066_1.0 IENVASLUGTTTRDFTQLNELQCRFPR-RLVVLGFPCNQFGHQ------ENCQ--NEEIL
SPP00000066_1.0.30.exonerate VTNVASKUGKTAVNYTQLVDLHARYAEKGLRILAFPCNQFGKQVGTAEQEPGD--EAQIK
SPP00000066_1.0.30.genewise -------UGKTAVNYTQLVDLHARYAEKGLRILAFPCNQFGKQ-----------------
SPP00000068_1.0 VTNVASQUGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQ------EPGS--NEEIK
SPP00000068_1.0.30.exonerate VTNVASKUGKTAVNYTQLVDLHARYAEKGLRILAFPCNQFGKQ------EPGD--EAQIK
SPP00000068_1.0.30.genewise VTNVASKUGKTAVNYTQLVDLHARYAEKGLRILAFPCNQFGKQ------EPGD--EAQIK
SPP00000071_1.0 VVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAFPCNQFGQQ------EPDS--NKEIE
SPP00000071_1.0.30.exonerate VTNVASKUGKTAVNYTQLVDLHARYAEKGLRILAFPCNQFGKQ------EPGD--EAQIK
SPP00000071_1.0.30.genewise -------UGKTAVNYTQLVDLHARYAEKGLRILAFPCNQFGKQ------EPGD--EAQIK
SPP00000082_1.0 IVNVASQCGLTNKNYTQLKELLDVYKKDGLEVLAFPCNQFAGQ------EPSC--EIDIQ
SPP00000082_1.0.30.exonerate VTNVASKUGKTAVNYTQLVDLHARYAEKGLRILAFPCNQFGKQ------EPGD--EAQIK
SPP00000082_1.0.30.genewise -------UGKTAVNYTQLVDLHARYAEKGLRILAFPCNQFGKQ------EPGD--EAQIK
SPP00000086_1.0 VVNIASKCGLTKNNYEKLTDLKEKYGERGLVILNFPCNQFGSQ------MPEADGEAMVC
SPP00000086_1.0.30.exonerate VTNVASKUGKTAVNYTQLVDLHARYAEKGLRILAFPCNQFGKQP----QEPGD--EAQIK
SPP00000086_1.0.30.genewise -------UGKTAVNYTQLVDLHARYAEKGLRILAFPCNQFGKQ------EPGD--EAQIK
SPP00000094_1.0 IVNVASKUCGFTPQYKELEELYKKYQDKGFVILGFPCNQFGKQ------EPGS--DEQIT
SPP00000094_1.0.30.exonerate VTNVASKUGKTAVNYTQLVDLHARYAEKGLRILAFPCNQFGKQ------EPGD--EAQIK
SPP00000094_1.0.30.genewise --------------YTQLVDLHARYAEKGLRILAFPCNQFGKQ------EPGD--EAQIK
SPP00000095_1.0 IVNVASKUCGFTPQYKELEALYKRYKDEGFTIIGFPCNQFGHQ------EPGS--DEEIA
SPP00000095_1.0.30.exonerate VTNVASKUGKTAVNYTQLVDLHARYAEKGLRILAFPCNQFGKQ------EPGD--EAQIK
SPP00000095_1.0.30.genewise --------------YTQLVDLHARYAEKGLRILAFPCNQFGKQ------EPGD--EAQIK
SPP00000099_1.0 IENVASLUGTTTRDYNQLNELQCRFPR-RLVVLGFPCNQFGHQ------ENCQ--NEEIL
SPP00000099_1.0.30.exonerate VTNVASKUGKTAVNYTQLVDLHARYAEKGLRILAFPCNQFGKQVGTAEQEPGD--EAQIK
SPP00000099_1.0.30.genewise -------UGKTAVNYTQLVDLHARYAEKGLRILAFPCNQFGKQ-----------------
SPP00000101_1.0 VTNVASQUGKTDVNYTQLVDLHARYAECGLRILAFPCNQFGRQ------EPGS--NQEIK
SPP00000101_1.0.30.exonerate VTNVASKUGKTAVNYTQLVDLHARYAEKGLRILAFPCNQFGKQ------EPGD--EAQIK
SPP00000101_1.0.30.genewise VTNVASKUGKTAVNYTQLVDLHARYAEKGLRILAFPCNQFGKQ------EPGD--EAQIK
SPP00000104_1.0 VVNVASECGFTDQNYRALQQLQRDLGPHHFNVLAFPCNQFGQQ------EPDT--NREIE
SPP00000104_1.0.30.exonerate VTNVASKUGKTAVNYTQLVDLHARYAEKGLRILAFPCNQFGKQ------EPGD--EAQIK
SPP00000104_1.0.30.genewise -------UGKTAVNYTQLVDLHARYAEKGLRILAFPCNQFGKQ------EPGD--EAQIK
: : * : :: ******.
SPP00000004_1.0 NSLKYVRPG-GGFEPNFMLFEKCEVNGAGAHPLFAFLREALPAPSDDATALMTDPKLITW
SPP00000004_1.0.30.exonerate AF------A-EGYGVKFDMFSKIEVNGDGAHPLWKWMK-E--------------------
SPP00000004_1.0.30.genewise AF------A-EGYGVKFDMFSKIEVNGDGAHPLWKWMK----------------------
SPP00000065_1.0 NSLKYVRPG-GGFEPNFMLFEKCEVNGAGAHPLFAFLREALPAPSDDATALMTDPKLITW
SPP00000065_1.0.30.exonerate AF------A-EGYGVKFDMFSKIEVNGDGAHPLWKWMK-E--------------------
SPP00000065_1.0.30.genewise AF------A-EGYGVKFDMFSKIEVNGDGAHPLWKWMKE---------------------
SPP00000098_1.0 NSLKYVRPG-GGFEPNFTLFEKCEVNGEKAHPLFTFLRNALPTPSDDPTALMTDPKYIIW
SPP00000098_1.0.30.exonerate AF------A-EGYGVKFDMFSKIEVNGDGAHPLWKWM--K--------------------
SPP00000098_1.0.30.genewise AF------A-EGYGVKFDMFSKIEVNGDGAHPLWKWMK----------------------
SPP00000005_1.0 NSLKYVRPG-GGYQPTFTLVQKCEVNGQNEHPVFAYLKDKLPYPYDDPFSLMTDPKLIIW
SPP00000005_1.0.30.exonerate AF------A-EGYGVKFDMFSKIEVNGDGAHPLWKWMKEQ--------------------
SPP00000005_1.0.30.genewise ---------------------------------------Q--------------------
SPP00000007_1.0 EF------A-AGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGK----------------
SPP00000007_1.0.30.exonerate AF------A-EGYGVKFDMFSKIEVNGDGAHPLWKWMKEQPKGR----------------
SPP00000007_1.0.30.genewise AF------A-EGYGVKFDMFSKIEVNGDGAHPLWKWMKEQPKGR----------------
SPP00000010_1.0 SF------ARRTYSVSFPMFSKIAVTGTGAHPAFKYLAQTSG------------------
SPP00000010_1.0.30.exonerate AF------A-EGYGVKFDMFSKIEVNGDGAHPLWKWMKEQPKG-----------------
SPP00000010_1.0.30.genewise AF------A-EGYGVKFDMFSKIEVNGDGAHPLWKWMKEQPKGR----------------
SPP00000011_1.0 SF------ARKNYGVTFPIFHKIKILGSEGEPAFRFLVDSSK------------------
SPP00000011_1.0.30.exonerate AF------A-EGYGVKFDMFSKIEVNGDGAHPLWKWMKEQPKG-----------------
SPP00000011_1.0.30.genewise AF------A-EGYGVKFDMFSKIEVNGDGAHPLWKWMKEQPKGR----------------
SPP00000066_1.0 NSLKYVRPG-GGYQPTFTLVQKCEVNGQNEHPKFAYLKDKLPYPYDDPFSLMTDPKLIIW
SPP00000066_1.0.30.exonerate AF------A-EGYGVKFDMFSKIEVNGDGAHPLWKWMKEQ--------------------
SPP00000066_1.0.30.genewise ------------------------------------------------------------
SPP00000068_1.0 EF------A-AGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGK----------------
SPP00000068_1.0.30.exonerate AF------A-EGYGVKFDMFSKIEVNGDGAHPLWKWMKEQPKGR----------------
SPP00000068_1.0.30.genewise AF------A-EGYGVKFDMFSKIEVNGDGAHPLWKWMKEQPKGR----------------
SPP00000071_1.0 SF------ARRTYSVSFPMFSKIAVTGTGAHPAFKYLA----------------------
SPP00000071_1.0.30.exonerate AF------A-EGYGVKFDMFSKIEVNGDGAHPLWKW------------------------
SPP00000071_1.0.30.genewise AF------A-EGYGVKFDMFSKIEVNGDGAHPLWKWM-----------------------
SPP00000082_1.0 AFV-----A-DKFKFEPTLFQKIDVNGDKQSPLFKFLKNEKGG-----------------
SPP00000082_1.0.30.exonerate AF------A-EGYGVKFDMFSKIEVNGDGAHPLWKWMKEQPKGR----------------
SPP00000082_1.0.30.genewise AF------A-EGYGVKFDMFSKIEVNGDGAHPLWKWMKEQPKGR----------------
SPP00000086_1.0 HL------R-DSKADIGEVFAKVDVNGDNAAPLYKYLKAKQTG-----------------
SPP00000086_1.0.30.exonerate AF------A-EGYGVKFDMFSKIEVNGDGAHPLWKWMKEQPKGR----------------
SPP00000086_1.0.30.genewise AF------A-EGYGVKFDMFSKIEVNGDGAHPLWKWMKEQPKGR----------------
SPP00000094_1.0 EFC-----Q-LNYGVTFPIMKKIDVNGSNADSVYNYLKSQKAGL----------------
SPP00000094_1.0.30.exonerate AF------A-EGYGVKFDMFSKIEVNGDGAHPLWKWMKEQPKGR----------------
SPP00000094_1.0.30.genewise AF------A-EGYGVKFDMFSKIEVNGDGAHPLWKWMKEQPK------------------
SPP00000095_1.0 QFC-----Q-LNYGVTFPIMKKIDVNGGNEDPVYKFLKSQKSGM----------------
SPP00000095_1.0.30.exonerate AF------A-EGYGVKFDMFSKIEVNGDGAHPLWKWMKEQPKGR----------------
SPP00000095_1.0.30.genewise AF------A-EGYGVKFDMFSKIEVNGDGAHPLWKWMKEQPKGR----------------
SPP00000099_1.0 NSLKYVRPG-GGYQPTFSLTQKCDVNGQNEHPVFAYLKDKLPYPYDDPFSLMTDPKLIIW
SPP00000099_1.0.30.exonerate AF------A-EGYGVKFDMFSKIEVNGDGAHPLWKWMKEQ--------------------
SPP00000099_1.0.30.genewise ------------------------------------------------------------
SPP00000101_1.0 EF------A-AGYNVKFDMYSKICVNGDDAHPLWKWMKVQPKGR----------------
SPP00000101_1.0.30.exonerate AF------A-EGYGVKFDMFSKIEVNGDGAHPLWKWMKEQPKGR----------------
SPP00000101_1.0.30.genewise AF------A-EGYGVKFDMFSKIEVNGDGAHPLWKWMKEQPKGR----------------
SPP00000104_1.0 NF------ARRTYSVSFPMFSKIAVTGTGAHPAFKYLTQTSG------------------
SPP00000104_1.0.30.exonerate AF------A-EGYGVKFDMFSKIEVNGDGAHPLWKWMKEQPKG-----------------
SPP00000104_1.0.30.genewise AF------A-EGYGVKFDMFSKIEVNGDGAHPLWKWMKEQPKGR----------------
SPP00000004_1.0 SPVCRNDVAWNFEKFLVGPDGVPLRRYSRRF----QTIDIEPDIEALLSQ----GPSCA
SPP00000004_1.0.30.exonerate -----------------------------------------------------------
SPP00000004_1.0.30.genewise ----------------------------------------------------------E
SPP00000065_1.0 SPVCRNDVAWNFEKFLVGPDGVPLRRYSRRF----QTIDIEPDIEALLSQ----GPSCA
SPP00000065_1.0.30.exonerate -----------------------------------------------------------
SPP00000065_1.0.30.genewise -----------------------------------------------------------
SPP00000098_1.0 SPVCRNDIAWNFEKFLVGPDGVPVRRYSRRF----RTIDIEPDIETLLSQ----QSGNS
SPP00000098_1.0.30.exonerate -----------------------------------------------------------
SPP00000098_1.0.30.genewise -----------------------------------------------------------
SPP00000005_1.0 SPVRRSDVAWNFEKFLIGPEGEPFRRYSRTF----PTINIEPDIKRLLK-------VAI
SPP00000005_1.0.30.exonerate -----------------------------------------------------------
SPP00000005_1.0.30.genewise -----------------------------------------------------------
SPP00000007_1.0 -GILGNAIKWNFTKFLIDKNGCVVKRYGPME----EPLVIEKDLPH-----------YF
SPP00000007_1.0.30.exonerate -GTLGNAIKWNFTKFLINREGQVVKRYSPMEXXXV----IEKDLP------------AY
SPP00000007_1.0.30.genewise -GTLGNAIKWNFTKFLINREGQVVKRYSPM----------------------------E
SPP00000010_1.0 -----KEPTWNFWKYLVAPDGKVVGAWDPTV----SVEEVRPQITALVRKLILLKREDL
SPP00000010_1.0.30.exonerate ------AIKWNFTKFLINREGQVVKRYS------------------------------P
SPP00000010_1.0.30.genewise -GTLG---KWEYL---------------------------------------------V
SPP00000011_1.0 -----KEPRWNFWKYLVNPEGQVVKFWKPEE----PIEVIRPDIAALVRQVIIKKKEDL
SPP00000011_1.0.30.exonerate ------AIKWNFTKFLINREGQVVKRYSPME--XVDVV-NREALLC-----------TR
SPP00000011_1.0.30.genewise -GTLG---KWEYL---------------------------------------------V
SPP00000066_1.0 SPVRRSDVAWNFEKFLIGPEGEPFRRYSRTF----PTINIEPDIKRLLK-------VAI
SPP00000066_1.0.30.exonerate -----------------------------------------------------------
SPP00000066_1.0.30.genewise -----------------------------------------------------------
SPP00000068_1.0 -GILGNAIKWNFTKFLIDKNGCVVKRYGPME----EPLVIEKDLPH-----------YF
SPP00000068_1.0.30.exonerate -GTLGNAIKWNFTKFLINREGQVVKRYSPMEXXXV----IEKDLP------------AY
SPP00000068_1.0.30.genewise -GTLGNAIKWNFTKFLINREGQVVKRYSPM----------------------------E
SPP00000071_1.0 ----------------------------------------------------------R
SPP00000071_1.0.30.exonerate ----------------------------------------------------------M
SPP00000071_1.0.30.genewise -----------------------------------------------------------
SPP00000082_1.0 --FMFDAIKWNFTKFLVGRDGKIIKRFGPTT----DPKDMEKDIKEALG-------EKL
SPP00000082_1.0.30.exonerate -GTLGNAIKWNFTKFLINREGQVVKRYS------------------------------P
SPP00000082_1.0.30.genewise -GTLGNAIKWNFTKFLINREGQVVKRYS------------------------------P
SPP00000086_1.0 --TLGSGIKWNFTKFLVNKEGVPINRYAPTT----DPMDIAKDIEK-----------LL
SPP00000086_1.0.30.exonerate -GTLGNAIKWNFTKFLINREGQVVKRYS------------------------------P
SPP00000086_1.0.30.genewise -GTLGNAIKWNFTKFLINREGQVVKRYS------------------------------P
SPP00000094_1.0 -LG-FKGIKWNFEKFLVDSNGKVVQRFSSLT----KPSSLDQEIQSLL---------SK
SPP00000094_1.0.30.exonerate -GTLG-AIKWNFTKFLINREGQVVKRYSP-----------------------------M
SPP00000094_1.0.30.genewise ----------------------------------------------------------G
SPP00000095_1.0 -LG-LRGIKWNFEKFLVDKKGKVYERYSSLT----KPSSLSETIEELLK-------EVE
SPP00000095_1.0.30.exonerate -GTLG-AIKWNFTKFLINREGQVVKRYSP-----------------------------M
SPP00000095_1.0.30.genewise -GTLGNAIKWNFTKFLINREGQVVKRYSP-----------------------------M
SPP00000099_1.0 SPVRRSDVSWNFEKFLIGPEGEPFRRYSRSF----QTINIEPDIKRLLK-------VAI
SPP00000099_1.0.30.exonerate -----------------------------------------------------------
SPP00000099_1.0.30.genewise -----------------------------------------------------------
SPP00000101_1.0 -GMLGNAIKWNFTKFLIDKNGCVVKRYGPME----EPQVIEKDLPC-----------YL
SPP00000101_1.0.30.exonerate -GTLGNAIKWNFTKFLINREGQVVKRYSPMEXXXV----IEKDLPA-----------YL
SPP00000101_1.0.30.genewise -GTLGNAIKWNFTKFLINREGQVVKRYSPM----------------------------E
SPP00000104_1.0 -----KEPTWNFWKYLVDPDGKVVGAWDPTV----PVAEIKPRITEQVMKLILRKREDL
SPP00000104_1.0.30.exonerate ------AIKWNFTKFLINREGQVVKRYS------------------------------P
SPP00000104_1.0.30.genewise -GTLG---KWEYL---------------------------------------------V
......................................................................................................................................................................................................................................................
BEST PAIRWISE ALIGNMENT
CLUSTAL FORMAT for T-COFFEE Version_7.54, SCORE=99, Nseq=2, Len=197
SPP00000068_1.0 MSLGRLCRLLKPALLCGALAAPGLAGTMCASRDDWRCARSMHEFSAKDIDGHMVNLDKYR
SPP00000068_1.0.30.genewise -----------------------------------------------------------R
*
SPP00000068_1.0 GFVCIVTNVASQUGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQEPGSNEEIKEFA
SPP00000068_1.0.30.genewise GFVCIVTNVASKUGKTAVNYTQLVDLHARYAEKGLRILAFPCNQFGKQEPGDEAQIKAFA
***********: *** *************** ******************.: :** **
SPP00000068_1.0 AGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGCVVKRY
SPP00000068_1.0.30.genewise EGYGVKFDMFSKIEVNGDGAHPLWKWMKEQPKGRGTLGNAIKWNFTKFLINREGQVVKRY
**.********* ****.********* ****:* **************:::* *****
SPP00000068_1.0 GPMEEPLVIEKDLPHYF
SPP00000068_1.0.30.genewise SPME-------------
.***
......................................................................................................................................................................................................................................................
RESULTADOS DEL Selenoprofiles
Output_id: GPx.6.selenocysteine
---------- --------------------
-Species Meleagris gallopavo -Taxid 9103
-Target /homes/users/U63748/gallopavo.fa
-Chromosome (+) 30
-Program blast
-Query name BLAST_QUERY_MASTER
-Query range 26-151 length:185 coverage: 0.68
-Profile range 179-341 length:447 coverage: 0.36 sec_position: [193]
-Average sequence identity with profile: 0.3475 (ignoring gaps: 0.423)
-State kept
------- alignment -------
Query RGKVLLIVNVASKUGFTP-QYTGLNALQEKYGPRGLVVLGFPCNQFGH <---Intron---> QEPGSNEEILNFLKYVRPGNGYGPNFPLFEKIDVNG
|| | // ||||||| | || | | /| /|| /| ||||||| < 81bp > |||| /| | / ||| | /| ||/|||
Target RGFVCIVTNVASKUGKTAVNYTQLVDLHARYAEKGLRILAFPCNQFGK QEPGDEAQIKAFAE------GYGVKFDMFSKIEVNG
agtgtagaaggtatgaaggataccggccgctggagtcacgtctactga cgcggggcaagtgg------gtggatgataaaggag
ggttgttcatccaggacctaacattatacgacaagtgttctcgaatga aacgaacatactca------gagtatattgatatag
gccccccccggcaaagcggtctgcctgctactggcagcgtccccgcgg ggcgcgggcactgg------ccgggctgccatgctg
*
Query ENAHPLYTFLKEECPG <---Intron---> PLDLIGDPKE-----IIWSP---VGTNDIKWNFEK
/ ||||/ //||/ | < 21bp > || | // || / / ||||| |
Target DGAHPLWKWMKEQPKG VLDGEGAMGPCCSAVLLLSPPVFLSLSAIKWNFTK
gggccctataagccag gcgggggagcttaggccctccgtctcagaatataa
agcactgagtaaacag ttagagctgcgggcttttccctttctgctagatca
ccccgggggggggcgc ggtgggagggcccatgccacgttctctccggcctg
------- positions -------
Exon 1 2516312 2516455
Exon 2 2516537 2516674
Exon 3 2516696 2516800
--------- SECIS ---------
None found
--------- 3' seq --------
Total sequence length available downstream >= 3000
Sequence until first stop codon:
GTAGGGGCCGTGCTGCCTTCTCCGGGGCTGTGTGTGGGTCAGACCTTCAGCTTTGGGGTGAGGGGGGAGAACCCCCAGGCACTGTGCCGGTATTGGGGTGTGGGATGGGAACGGGCTGAGG
V G A V L P S P G L C V G Q T F S F G V R G E N P Q A L C R Y W G V G W E R A E
GGGAGCAGCTCTGCAGGGTGCAGCTCTGCTATAGGGCAGTCCAGCCCCGGAGCAGAGCCCTGTGCTGCTCAGCCGTTCCCATGCTGCAGCTGGACTCGTTCATTTGGCTCCTGCTTCACTC
G E Q L C R V Q L C Y R A V Q P R S R A L C C S A V P M L Q L D S F I W L L L H S
CCACAGTTTCTTATCAACCGCGAGGGCCAAGTGGTGA
H S F L S T A R A K W *
......................................................................................................................................................................................................................................................