SELENOPROTEÍNAS DE Meleagris Gallopavo
PROTEIN REPORT FOR Selenoprotein T (Sel T)
| DESCRIPCIÓN | Selenoproteína. 11(-):23884066...23881296. |
| SECISearch | Sin resultados. |
| SELENOPROFILES | Encontrada. Elección Genewise. Predicción elemento SECIS (strand:- positions:23880581-23880684) |
| COMENTARIOS | Elección: Genewise. No hay predicción para la región con la selenocisteína. Hay predicción de Selenoprofiles, pero también sin la región con la Selenocisteína. Ponemos en duda la funcionalidad de esta proteína en Meleagris gallopavo. |
1. ALINEAMIENTO MÚLTIPLE DE TODOS LOS HOMÓLOGOS DE SELENODB
2. BEST PAIRWISE ALIGNMENT
4. RESULTADOS DEL Selenoprofiles
ALINEAMIENTO MÚLTIPLE DE TODOS LOS HOMÓLOGOS DE SELENODB
CLUSTAL FORMAT for T-COFFEE Version_7.54, SCORE=99, Nseq=9, Len=203
SPP00000025_1.0 M--------RLLLLLLVAASAMVRSEASANLGGVPSKRLKMQYATGPLLKFQICVSUGYR
SPP00000025_1.0.11.exonerate ------------------------------------------------------------
SPP00000025_1.0.11.genewise ------------------------------------------------------------
SPP00000116_1.0 M--------RLLLLLLVAASAVVRSEASANLGGVPSKRLKMQYATGPLLKFQICVSUGYR
SPP00000116_1.0.11.exonerate ------------------------------------------------------------
SPP00000116_1.0.11.genewise ------------------------------------------------------------
SPP00000046_1.0 MERLTGRNVALLVLCLCAGYALVFAEGEKE---IPVTKFG--QNIAPTMTFLYCYSCGYR
SPP00000046_1.0.11.exonerate ------------------------------------------------------------
SPP00000046_1.0.11.genewise ------------------------------------------------------------
SPP00000025_1.0 RVFEEYMRVISQRYPDIRIEGENYLPQPIYRHIASFLSVFKLVLIGLIIVGKDPFAFFGM
SPP00000025_1.0.11.exonerate ----------------------------LYRHIASFLSVFKLVLIGLIIVGKDPFAFFGM
SPP00000025_1.0.11.genewise ------------------------------RHIASFLSVFKLVLIGLIIVGKDPFAFFGM
SPP00000116_1.0 RVFEEYMRVISQRYPDIRIEGENYLPQPIYRHIASFLSVFKLVLIGLIIVGKDPFAFFGM
SPP00000116_1.0.11.exonerate ----------------------------LYRHIASFLSVFKLVLIGLIIVGKDPFAFFGM
SPP00000116_1.0.11.genewise ------------------------------RHIASFLSVFKLVLIGLIIVGKDPFAFFGM
SPP00000046_1.0 KAFEDYVGLLGEKYPQIQVNGGNYDPPGLNYYLSKMIFALKIIIIVSVVSAVSPFTFLGL
SPP00000046_1.0.11.exonerate ---------------------------SFNRHIASFLSVFKLVLIGLIIVGKDPFAFFGM
SPP00000046_1.0.11.genewise -----------------------------NRHIASFLSVFKLVLIGLIIVGKDPFAFFGM
:::.:: .:*:::* :: . .**:*:*:
SPP00000025_1.0 QAPSIWQWGQENKVYACMMVFFLSNMIENQCMSTGAFEITLNDVPVWSKLESGHLPSMQQ
SPP00000025_1.0.11.exonerate QAPSIWQWGQENKVYACMMVFFLSNMIENQCMSTGAFEITLNDVPVWSKLESGHLPSMQQ
SPP00000025_1.0.11.genewise QAPSIWQWGQENKVYACMMVFFLSNMIENQCMSTGAFEITLNDVPVWSKLESGHLPSMQQ
SPP00000116_1.0 QAPSIWQWGQENKVYACMMVFFLSNMIENQCMSTGAFEITLNDVPVWSKLESGHLPSMQQ
SPP00000116_1.0.11.exonerate QAPSIWQWGQENKVYACMMVFFLSNMIENQCMSTGAFEITLNDVPVWSKLESGHLPSMQQ
SPP00000116_1.0.11.genewise QAPSIWQWGQENKVYACMMVFFLSNMIENQCMSTGAFEITLNDVPVWSKLESGHLPSMQQ
SPP00000046_1.0 NTPSWWSHMQANKIYACMMIFFLGNMLEAQLISSGAFEITLNDVPVWSKLQTGRFPSPEV
SPP00000046_1.0.11.exonerate QAPSIWQWGQENKVYACMMVFFLSNMIENQCMSTGAFEITLNDVPVWSKLESGHLPSMQQ
SPP00000046_1.0.11.genewise QAPSIWQWGQENKVYACMMVFFLSNMIENQCMSTGAFEITLNDVPVWSKLESGHLPSMQQ
::** *. * **:*****:***.**:* * :*:****************::*::** :
SPP00000025_1.0 LVQILDNEMKLNVHMDSIPHHRS
SPP00000025_1.0.11.exonerate LVQILDNEMKLNVHMESMPHHRS
SPP00000025_1.0.11.genewise LVQILDNEMKLNVHMESMPHHRS
SPP00000116_1.0 LVQILDNEMKLNVHMDSIPHHRS
SPP00000116_1.0.11.exonerate LVQILDNEMKLNVHMESMPHHRS
SPP00000116_1.0.11.genewise LVQILDNEMKLNVHMESMPHHRS
SPP00000046_1.0 LFQIIDNHLQFTEKVQENPDFVK
SPP00000046_1.0.11.exonerate LVQILDNEMKLNVHMESM----P
SPP00000046_1.0.11.genewise LVQILDNEMKLNVHMESM----P
*.**:**.:::. :::.
......................................................................................................................................................................................................................................................
BEST PAIRWISE ALIGNMENT
CLUSTAL FORMAT for T-COFFEE Version_7.54, SCORE=100, Nseq=2, Len=195
SPP00000116_1.0 MRLLLLLLVAASAVVRSEASANLGGVPSKRLKMQYATGPLLKFQICVSUGYRRVFEEYMR
SPP00000116_1.0.11.genewise ------------------------------------------------------------
SPP00000116_1.0 VISQRYPDIRIEGENYLPQPIYRHIASFLSVFKLVLIGLIIVGKDPFAFFGMQAPSIWQW
SPP00000116_1.0.11.genewise ----------------------RHIASFLSVFKLVLIGLIIVGKDPFAFFGMQAPSIWQW
**************************************
SPP00000116_1.0 GQENKVYACMMVFFLSNMIENQCMSTGAFEITLNDVPVWSKLESGHLPSMQQLVQILDNE
SPP00000116_1.0.11.genewise GQENKVYACMMVFFLSNMIENQCMSTGAFEITLNDVPVWSKLESGHLPSMQQLVQILDNE
************************************************************
SPP00000116_1.0 MKLNVHMDSIPHHRS
SPP00000116_1.0.11.genewise MKLNVHMESMPHHRS
*******:*:*****
......................................................................................................................................................................................................................................................
RESULTADOS DEL Selenoprofiles
Output_id: SelT.1.unaligned
---------- ----------------
-Species Meleagris gallopavo -Taxid 9103
-Target /homes/users/U63748/gallopavo.fa
-Chromosome (-) 11
-Program genewise
-Query name gi|143771645|ref|NP_001006557.3| selenoprotein T [Gallus gallus] gi|172045965|sp|Q5ZJN8.3|SELT_CHICK
RecName: Full=Selenoprotein T_ Short=SelT_ Flags: Precursor
-Query range 87-199 length:199 coverage: 0.57
-Profile range 329-488 length:488 coverage: 0.33 sec_position: [282]
-Average sequence identity with profile: 0.3827 (ignoring gaps: 0.4111)
-State kept
------- alignment -------
Query RHIASFLSVFKLVLIGLIIVGKDPFAFFGMQAPSIWQWGQENK <---Intron---> VYACMMVFFLSNMIENQCMSTGAFEITLND <---Intron
||||||||||||||||||||||||||||||||||||||||||| < 1398bp > |||||||||||||||||||||||||||||| < 1034bp
Target RHIASFLSVFKLVLIGLIIVGKDPFAFFGMQAPSIWQWGQENK VYACMMVFFLSNMIENQCMSTGAFEITLND
acagttctgtacgtagtaaggagctgttgacgcaatctgcgaa gtgtaagttcaaaagactataggtgaatag
gatccttcttattttgttttgaactcttgtaccgtgaggaaaa tacgttttttgattaaagtccgctatcta
gcaaccgtccgaaaacaatccgtattctcgataccgggcaacg ttttggtccgccgtgcgtgagtataatgt
Query ---> VPVWSKLESGHLPSMQQLVQILDNEMKLNVHMESMPHHRS
> ||||||||||||||||||||||||||||||||||||||||
Target VPVWSKLESGHLPSMQQLVQILDNEMKLNVHMESMPHHRS
gcgttacgtgccctacccgcacgagaacagcagtacccct
atctgcatacgatcctaattattaaatatatatactcaagc
ttaggtgagtccttcgggtaattttaggctgcggagtctaa
------- positions -------
Exon 1 23883938 23884066
Exon 2 23882452 23882539
Exon 3 23881296 23881417
--------- SECIS ---------
>SelT.1.unaligned.esecis:str.1 chromosome:11 strand:- positions:23880581-23880684 species:"Meleagris gallopavo"
target:/homes/users/U63748/gallopavo.fa distance_from_sec_uga:None distance_from_cds:611
GGUGAUUUCC AGGGCCGC GUGUCUCGGACCA AUGAA GGCCUGUACUG AA GACAGCUUGCUGU UGGUACAGACU GGAU GAUUCUCUC GCAGUCAC GUUGUGCCCC
((......)) .((((.(( (((.((((((... .(((( ((.(((((((. .. (((((....)))) )))))))).)) )))) .....)).) ).)).))) ))...)))).
--------- 3' seq --------
Total sequence length available downstream >= 3000
Sequence until first stop codon:
TAG
*
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