SELENOPROTEÍNAS DE Meleagris gallopavo
PROTEIN REPORT FOR Selenoprotein 15 (Sel 15)
| DESCRIPCIÓN | Selenoproteína. 2(-):110511427...110511756. |
| SECISearch | Sin resultados. |
| SELENOPROFILES | No Encontrada. Elección: Blast. Predicción elementos SECIS (strand:- positions:110511247-110511340) y (strand:- positions:110510788-110510892) |
| COMENTARIOS | Esta selenoproteína no la hemos detectado usando las selenoproteínas de SelenoDB como query pero SelenoProfiles si la ha encontrado. |
4. RESULTADOS DEL Selenoprofiles
RESULTADOS DEL Selenoprofiles
Output_id: Sel15.5.selenocysteine
---------- ----------------------
-Species Meleagris gallopavo -Taxid 9103
-Target /homes/users/U63748/gallopavo.fa
-Chromosome (-) 2
-Program blast
-Query name BLAST_QUERY_MASTER
-Query range 1-111 length:201 coverage: 0.55
-Profile range 1-126 length:233 coverage: 0.54 sec_position: [106]
-Average sequence identity with profile: 0.0945 (ignoring gaps: 0.1315)
-State kept
------- alignment -------
Query MAAEALILRLLALLLLLQAVSASVGAEFSAEDCRELGFNKSNLLCSSCDLL---GQFGLDQELKPDCRECCQEDAQDDAESKK--KYAGAVLEVCTGUKL
/ / / / /| / |/ | | |/| | || / // | / | |
Target LRSTQT---SPSTSSSAASR-SSTPSTSSSPACSSP---ASPCWSSTCPPTAVRRSHSASPSFCPSPSSCCSLPK--SSPPPLWSSHSLASISSSP-USL
cataca---tctatttggtc-ttactatttcgtttc---gtcttttatccaggaatctgtctttctcttttttca--ttcccctttcttgaatttc-ttt
tgccac---ccccccccccg-cccccccccccgccc---cccggcccgcccctggcaccccctgcccccggctca--ccccctgccactcgtcccc-gct
gatcga---atttgaccccc-ttaaacaactccatt---cagcgttcctgtggaaactatgcctcagtcccaaga--actatcgaccaggtcctaa-atg
*
Query GAYPQ----IQAFIKSDLPR
| / / / |
Target SRSPSSSLFLSSMCTTAPPA
tctctttcttttataagccg
cgccccctttcctgcccccc
actaaaagtgcagccctcaa
------- positions -------
Exon 1 110511427 110511756
--------- SECIS ---------
>Sel15.5.selenocysteine.esecis:loosest.1 chromosome:2 strand:- positions:110511247-110511340 species:"Meleagris gallopavo" target:/homes/users/U63748/gallopavo.fa distance_from_sec_uga:152 distance_from_cds:86
CCUGCUGAGG GGACCAC AGGCCAAU AUGAC CCUCCGGGGA CC AGGCUCAGCACCUCCCGC UGCUGGCUGG AGAC CGAU GUGGAU GACAAGUGGG
(((.....)) )..(((( .(.(((.( .(((( ((........ .. .(((.(((((.(....). )))))))))) )))) .).. .))).. ..)..)))).
>Sel15.5.selenocysteine.esecis:loosest.2 chromosome:2 strand:- positions:110510788-110510892 species:"Meleagris gallopavo" target:/homes/users/U63748/gallopavo.fa distance_from_sec_uga:600 distance_from_cds:534
GAUGGGGAUA UCCAGUU GUAGCCAUGCAUG CUGAG GACCUUAGUUC AG GGGAUCUAUGAUCACCUCCUGG GAAAUAAGGAU AGAU GUU GCACUGA GCAACAUGGU
..((((.... ))))..( (((....)))).. .(((( (.(((((.((( .. ((((............)))).. ))).))))).) )))) ((( ((..... ))))).....
--------- 3' seq --------
Total sequence length available downstream >= 3000
Sequence until first stop codon:
CCCACACCATGCCCCACTGGGTGCGTAGCTTCTTCCTGGGCTTCATCCCCCGTTGGCTCTTCATGA
P T P C P T G C V A S S W A S S P V G S S *
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