genewise output Score 20.56 bits over entire alignment Scores as bits over a synchronous coding model Warning: The bits scores is not probablistically correct for single seqs See WWW help for more info SPP00000035_1.0 4 MAVALRGLG-GRFRWRTQAVAGGVRGAARGAAAG +A A RGLG G + R +A G GAA GA +G LAAACRGLGRGSLGSRPEAGWPGGAGAASGAPSG GL841864.1:sub161734 cgggtcgcgagtcgtccgggtcggggggtggctg tcccgggtgggctgcgcacggcggcgcccgcccg gactcacgagcccgcgtatgggcgcggctgtcgg // >GL841864.1:subseq(0,300000).pep LAAACRGLGRGSLGSRPEAGWPGGAGAASGAPSG // >GL841864.1:subseq(0,300000).[161734:161835].sp CTGGCAGCCGCTTGCCGAGGCCTGGGAAGGGGCTCCCTCGGGTCCCGGCCTGAAGCTGGG TGGCCGGGCGGGGCCGGGGCGGCCTCTGGGGCTCCCTCGGGG // GL841864.1:subseq(0,300000) GeneWise match 161734 161835 20.56 + . GL841864.1:subseq(0,300000)-genewise-prediction-1 GL841864.1:subseq(0,300000) GeneWise cds 161734 161835 0.00 + 0 GL841864.1:subseq(0,300000)-genewise-prediction-1 // genewise output Score 345.34 bits over entire alignment Scores as bits over a synchronous coding model Warning: The bits scores is not probablistically correct for single seqs See WWW help for more info SPP00000035_1.0 34 AAGQRDYDLLVVGGGSGGLACAKE + G ++DLLV+GGGSGGLACAKE STGVNEFDLLVIGGGSGGLACAKE A:A[gct] GL841864.1:sub-40589 taggagtgccgagggtggcgtgagGGTACGTC Intron 1 ccgtaatattttgggcggtcgcaa <1-----[40516:39725] aatctgttgggcgcccccgctcaa SPP00000035_1.0 58 AQLGRKVAVVDYVEPSPQ A LG+KVAV+DYV PSP+ ADLGKKVAVMDYVVPSPR G:G[ggc] GL841864.1:sub-39727 AAGCTggtgaagggagtggctcaGGTGAGAC Intron 2 CAGGC -1> catgaatcttaattcccg <1-----[39667:38797]-1> ccgaggggcgccgcacga SPP00000035_1.0 78 TRWGLGGTCVNVGCIPKKLMHQAALLGGLIQDAPNYGWEVAQPVPHD T WGLGGTCVNVGCIPKKLMH +A LG ++DAP YGW+VA VPH+ TSWGLGGTCVNVGCIPKKLMHHSANLGHTLRDAPAYGWQVAPSVPHN GL841864.1:sub-38794 aatgcggatgaggtacaacacctgacgcaccggcgtgtcggctgcca cgggtggcgtatggtcaattaaccatgactgacccaggatccctcaa ccgccgcgtgcgccccggcgccgccggcggacctcccgggccggctc SPP00000035_1.0 125 RKMAEAVQNHVKSLNWGHRVQLQ +MA+ +QN+VKSLNWGHRVQLQ W:W[tgg] HQMAQGIQNYVKSLNWGHRVQLQ GL841864.1:sub-38653 TGGTAAGTG Intron 3 CAGGccagcgacatgatcatgccgccc <2-----[38651:38246]-2> aatcagtaaatactaggagtata tgggagtgcccgcgcgcccgggg SPP00000035_1.0 149 D KVKYFNIKASFVDEHTVCGVAK + K+KYFNI+ SFV+EHTV GV K E R:R[cgg] KIKYFNIQGSFVNEHTVHGVDK GL841864.1:sub-38175 gCGGTAAGTG Intron 4 CAGGaaattaacgatgagcagcggga a <2-----[38170:36889]-2> ataatataggttaaactagtaa g acaccccgcttgtgcggcgccg SPP00000035_1.0 173 GGKEILLSADHIIIATGGRPRYPT--HIEG GKE+ + + A GG R + G SGKEVSRRVEGLRGALGGPGRSDAAGNLPG GL841864.1:sub-36821 tgaggaccgggccggcggcgatggggaccg cgaatgggtagtggctggcggcaccgatcg cagggcactggcggtggcgcgtcgttccta SPP00000035_1.0 201 ALEYGITSDDIFWLKESPGK A EYGI+SDD+FWLKESPGK -:G[ggg] AKEYGISSDDLFWLKESPGK GL841864.1:sub-36731 GGTGTACA Intron 5 AAGGGgagtgaaaggcttcagtcga <1-----[36730:34935]-1> caaagtggaattgtaaccga cggcgccctcgcgcggcaaa SPP00000035_1.0 221 LVVGAS LVVGAS T:T[acg] LVVGAS GL841864.1:sub-34872 ACGTAAGGG Intron 6 CAGGtgggga <2-----[34870:24048]-2> tttgcg ggtacc SPP00000035_1.0 228 VALECAGFLTGIGLDTTIMMRSI V+LECAGFLTG+GLDTT+M+RSI Y:Y[tat] VSLECAGFLTGFGLDTTVMVRSI GL841864.1:sub-24028 TGTATCCT Intron 7 CAGATgtcgtggtcagtgtgaagagaaa <1-----[24027:22768]-1> tctagcgttcgtgtacctttggt gcggcggccgctcgccccgcacc SPP00000035_1.0 252 PLRGFDQ QMSSMVIEHMASHGTRFLR PLRGFDQ QM+ +V +HM S GT+FL+ PLRGFDQ QMALLVTDHMESQGTKFLK GL841864.1:sub-22696 cccgtgcGTAGGCC Intron 8 CAGcagccgagcagtcgaatta ctggtaa<0-----[22675:18322]-0>atctttcaatacagcatta ggactcg agcgggcccggggccgtgg SPP00000035_1.0 278 GCAPSRVRRLPDGQLQVTWEDSTTGKEDTGTFDTVLWAI C ++ +L + QL+V W + KE FDTVLWA+ HCTMKKLEKLQNNQLKVYWNNHEENKECLDVFDTVLWAV GL841864.1:sub-18264 ctaaaatgaccaaccagttaacggaagttggtgagttgg agctaataataaaatatagaaaaaaaagtattacttgct cccggagagtgttgaaccgtccggcggtgtgccacggtg SPP00000035_1.0 317 RVPDTRSLNLEKAGVDTSPDTQK RVP+TR LNLEK GV PD++K G:G[ggt] RVPETRGLNLEKVGVKLHPDSRK GL841864.1:sub-18147 GGTAAGTG Intron 9 AAGGTcgcgaagcacgagggacccgtca <1-----[18146: 89]-1> gtcacggtataatgtatacacga ccaacacgtgggtaggtcgccgg SPP00000035_1.0 341 ILVDS ILV++ ILVNA GL841864.1:subs -17 acgag tttac cggcc // Making a A in phase 1 intron Making a G in phase 1 intron Making a W in phase 2 intron Making a R in phase 2 intron Making a G in phase 1 intron Making a T in phase 2 intron Making a Y in phase 1 intron Making a G in phase 1 intron >GL841864.1:subseq(0,300000).pep STGVNEFDLLVIGGGSGGLACAKEAADLGKKVAVMDYVVPSPRGTSWGLGGTCVNVGCIP KKLMHHSANLGHTLRDAPAYGWQVAPSVPHNWHQMAQGIQNYVKSLNWGHRVQLQERKIK YFNIQGSFVNEHTVHGVDKSGKEVSRRVEGLRGALGGPGRSDAAGNLPGGAKEYGISSDD LFWLKESPGKTLVVGASYVSLECAGFLTGFGLDTTVMVRSIPLRGFDQQMALLVTDHMES QGTKFLKHCTMKKLEKLQNNQLKVYWNNHEENKECLDVFDTVLWAVGRVPETRGLNLEKV GVKLHPDSRKILVNA // >GL841864.1:subseq(0,300000).[40589:1].sp TCAACAGGTGTCAATGAGTTTGATCTGCTGGTGATCGGGGGCGGCTCCGGCGGCCTGGCC TGTGCCAAAGAAGCTGCCGACTTGGGAAAGAAGGTGGCGGTCATGGACTACGTGGTCCCA TCCCCGAGAGGCACCAGCTGGGGCCTCGGGGGCACGTGTGTGAACGTGGGCTGCATCCCC AAGAAGCTCATGCACCACTCGGCCAACCTGGGGCACACGCTGCGAGACGCCCCTGCCTAC GGCTGGCAGGTGGCCCCCTCGGTGCCCCATAACTGGCATCAGATGGCGCAAGGGATTCAG AACTACGTCAAGTCCCTGAACTGGGGCCACCGCGTGCAGCTGCAGGAGCGGAAAATCAAA TACTTCAACATCCAGGGCAGTTTTGTGAATGAGCACACGGTGCACGGGGTCGACAAGTCC GGAAAGGAGGTGAGCCGACGCGTTGAGGGGCTCCGGGGGGCTCTGGGGGGCCCGGGCAGG TCTGACGCGGCTGGTAACCTCCCTGGAGGGGCCAAGGAGTACGGGATCAGCAGCGATGAC CTGTTCTGGCTCAAGGAGTCCCCAGGAAAAACGTTGGTGGTTGGAGCCAGCTATGTGTCC CTGGAGTGCGCGGGGTTCCTCACGGGCTTTGGCTTGGACACCACCGTCATGGTCAGAAGC ATCCCGCTGCGAGGCTTTGACCAGCAAATGGCCCTGCTGGTGACCGACCACATGGAGTCG CAGGGCACCAAGTTTTTGAAGCACTGCACCATGAAGAAATTGGAAAAGCTTCAGAATAAT CAGCTAAAAGTCTACTGGAATAACCACGAGGAGAACAAGGAGTGTTTGGATGTGTTCGAC ACAGTCTTGTGGGCTGTGGGTCGCGTCCCAGAAACCAGAGGCCTGAATCTGGAGAAGGTT GGAGTGAAGCTTCACCCGGACTCCCGGAAGATCCTGGTGAACGCC // GL841864.1:subseq(0,300000) GeneWise match 40589 3 346.33 - . GL841864.1:subseq(0,300000)-genewise-prediction-1 GL841864.1:subseq(0,300000) GeneWise cds 40589 40517 0.00 - 0 GL841864.1:subseq(0,300000)-genewise-prediction-1 GL841864.1:subseq(0,300000) GeneWise intron 40516 39725 0.00 - . GL841864.1:subseq(0,300000)-genewise-prediction-1 GL841864.1:subseq(0,300000) GeneWise cds 39724 39668 0.00 - 2 GL841864.1:subseq(0,300000)-genewise-prediction-1 GL841864.1:subseq(0,300000) GeneWise intron 39667 38797 0.00 - . GL841864.1:subseq(0,300000)-genewise-prediction-1 GL841864.1:subseq(0,300000) GeneWise cds 38796 38652 0.00 - 2 GL841864.1:subseq(0,300000)-genewise-prediction-1 GL841864.1:subseq(0,300000) GeneWise intron 38651 38246 0.00 - . GL841864.1:subseq(0,300000)-genewise-prediction-1 GL841864.1:subseq(0,300000) GeneWise cds 38245 38171 0.00 - 1 GL841864.1:subseq(0,300000)-genewise-prediction-1 GL841864.1:subseq(0,300000) GeneWise intron 38170 36889 0.00 - . GL841864.1:subseq(0,300000)-genewise-prediction-1 GL841864.1:subseq(0,300000) GeneWise cds 36888 36731 0.00 - 1 GL841864.1:subseq(0,300000)-genewise-prediction-1 GL841864.1:subseq(0,300000) GeneWise intron 36730 34935 0.00 - . GL841864.1:subseq(0,300000)-genewise-prediction-1 GL841864.1:subseq(0,300000) GeneWise cds 34934 34871 0.00 - 2 GL841864.1:subseq(0,300000)-genewise-prediction-1 GL841864.1:subseq(0,300000) GeneWise intron 34870 24048 0.00 - . GL841864.1:subseq(0,300000)-genewise-prediction-1 GL841864.1:subseq(0,300000) GeneWise cds 24047 24028 0.00 - 1 GL841864.1:subseq(0,300000)-genewise-prediction-1 GL841864.1:subseq(0,300000) GeneWise intron 24027 22768 0.00 - . GL841864.1:subseq(0,300000)-genewise-prediction-1 GL841864.1:subseq(0,300000) GeneWise cds 22767 22676 0.00 - 2 GL841864.1:subseq(0,300000)-genewise-prediction-1 GL841864.1:subseq(0,300000) GeneWise intron 22675 18322 0.00 - . GL841864.1:subseq(0,300000)-genewise-prediction-1 GL841864.1:subseq(0,300000) GeneWise cds 18321 18147 0.00 - 0 GL841864.1:subseq(0,300000)-genewise-prediction-1 GL841864.1:subseq(0,300000) GeneWise intron 18146 89 0.00 - . GL841864.1:subseq(0,300000)-genewise-prediction-1 GL841864.1:subseq(0,300000) GeneWise cds 88 3 0.00 - 2 GL841864.1:subseq(0,300000)-genewise-prediction-1 //