genewise output
Score 159.67 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000031_1.0   31 EPCGFEATYLELASAVKEQYPGIEIESRLGGT                  
                     +PCGFE+TYLELASAVKE+YPGIEIESRLGGT                  
                     KPCGFESTYLELASAVKEEYPGIEIESRLGGT                  
GL856827.1:subs50000 actgtgtatcgcgaggaggtcgagagtccgga                  
                     acggtaccatatcgctaaaacgtatacgtggc                  
                     actctgcccgggtttggaactctgtgactgct                  


SPP00000031_1.0   63                           AFEIEINGQLVFSKLENGGFPYE 
                                               AFEIEINGQLVFSKLENGGFPYE 
                               G:G[gga]        AFEIEINGQLVFSKLENGGFPYE 
GL856827.1:subs50096 GGTGAGGA  Intron 1   TAGGAgtgagaagctgttacgaggtctg 
                      <1-----[50097:51421]-1>  ctatatagatttcataaggtcaa 
                                               ccgtgctgggctcgggtggtcca 


SPP00000031_1.0   87 KD                       LIEAIRRASNGETLEKITNSRPPC 
                     KD                       LIEAIRRAS+GE L+KITNSRPPC 
                     KD                       LIEAIRRASSGEPLQKITNSRPPC 
GL856827.1:subs51493 agGTGAGTA  Intron 2   CAGcaggacagaaggcccaaaaaccct 
                     aa<0-----[51499:51574]-0>ttactggcgggactaatcaggccg 
                     gt                       ccgtcaactcagtgagcctcccct 


SPP00000031_1.0  113 VIL                                               
                     VIL                                               
                     VIL                                               
GL856827.1:subs51647 gac                                               
                     ttt                                               
                     ccg                                               


//
Making a G in phase 1 intron
>GL856827.1:subseq(1626120,300000).pep
KPCGFESTYLELASAVKEEYPGIEIESRLGGTGAFEIEINGQLVFSKLENGGFPYEKDLI
EAIRRASSGEPLQKITNSRPPCVIL
//
>GL856827.1:subseq(1626120,300000).[50000:51655].sp
AAACCCTGTGGCTTTGAGTCCACCTACCTGGAGCTGGCTAGTGCTGTGAAGGAAGAATAC
CCTGGCATTGAGATTGAGTCACGCCTTGGGGGCACTGGAGCCTTCGAGATTGAGATCAAT
GGGCAGTTGGTCTTTTCCAAGCTGGAGAATGGGGGGTTTCCCTACGAAAAGGATCTCATC
GAGGCTATCCGAAGAGCCAGTAGCGGAGAGCCTCTGCAAAAGATCACCAATAGCCGCCCC
CCCTGTGTCATCCTG
//
GL856827.1:subseq(1626120,300000)	GeneWise	match	50000	51655	159.67	+	.	GL856827.1:subseq(1626120,300000)-genewise-prediction-1
GL856827.1:subseq(1626120,300000)	GeneWise	cds	50000	50096	0.00	+	0	GL856827.1:subseq(1626120,300000)-genewise-prediction-1
GL856827.1:subseq(1626120,300000)	GeneWise	intron	50097	51421	0.00	+	.	GL856827.1:subseq(1626120,300000)-genewise-prediction-1
GL856827.1:subseq(1626120,300000)	GeneWise	cds	51422	51498	0.00	+	2	GL856827.1:subseq(1626120,300000)-genewise-prediction-1
GL856827.1:subseq(1626120,300000)	GeneWise	intron	51499	51574	0.00	+	.	GL856827.1:subseq(1626120,300000)-genewise-prediction-1
GL856827.1:subseq(1626120,300000)	GeneWise	cds	51575	51655	0.00	+	0	GL856827.1:subseq(1626120,300000)-genewise-prediction-1
//

genewise output
Score 18.84 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000031_1.0   56 ESRLGGTGAFEIEINGQLVF                              
                     +SRLGG G + + I G + F                              
                     DSRLGGAGDLSLRIWGGVCF                              
GL856827.1:su-119790 gaatgggggcaccatgggtt                              
                     aggtggcgatgtgtgggtgt                              
                     ccgagactccccgtgtgtcc                              


//
>GL856827.1:subseq(1626120,300000).pep
DSRLGGAGDLSLRIWGGVCF
//
>GL856827.1:subseq(1626120,300000).[119790:119729].sp
GACAGCAGGTTAGGGGGAGCCGGTGACCTCAGCCTCCGGATTTGGGGTGGGGTTTGCTTC
//
GL856827.1:subseq(1626120,300000)	GeneWise	match	119790	119731	18.84	-	.	GL856827.1:subseq(1626120,300000)-genewise-prediction-1
GL856827.1:subseq(1626120,300000)	GeneWise	cds	119790	119731	0.00	-	0	GL856827.1:subseq(1626120,300000)-genewise-prediction-1
//