genewise output
Score 152.29 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000028_1.0   90 ELYLDESKQLYKELGFK                          YNSLSI 
                     ELYLDESKQ YKELGFK                          YNSLSI 
                     ELYLDESKQSYKELGFK           R:R[aga]       YNSLSI 
GL853792.1      1827 gctcggaacatagcgtaAGGTGGGTG  Intron 1   CAGAtaataa 
                     atataagaagaaatgta  <2-----[1880 : 3315]-2> aagtgt 
                     gttttatggtcgagatg                          ctcgcc 


SPP00000028_1.0  114 LPAALGKPVRDVAAK                       AKAVGIQGNLS 
                     +PAA+GKPVRDVAAK                       AKA+GI GNLS 
                     IPAAVGKPVRDVAAK                       AKAMGIHGNLS 
GL853792.1      3335 acggggacgcggggaGTCAGTG  Intron 2   CAGgagagacgatt 
                     tccctgactgatcca<0-----[3380 : 3469]-0>cactgtagatc 
                     catttggacgtatcg                       agtgcctgcgc 


SPP00000028_1.0  140 GDLLQSGGLLVVSK                          GDKVLLHFV 
                     GDLLQSGG+L+VSK                          G+KVLLHF+ 
                     GDLLQSGGMLIVSK          G:G[ggt]        GNKVLLHFI 
GL853792.1      3503 ggcccaggatagaaGGTCAGTG  Intron 3   CAGGTgaagcccta 
                     gattagggttttga <1-----[3546 : 4612]-1>  gaatttatt 
                     tccgataggattca                          ccggggtcc 


SPP00000028_1.0  164 QKSPGDYVPKEHILQVLGISAEVCASDPPQ                    
                     Q SPGDYVP E ILQ LGISA+  +S+ PQ                    
                     QSSPGDYVPLETILQTLGISADAHSSEKPQ                    
GL853792.1      4642 catcggtgccgaaccatgatgggctagacc                    
                     agccgaatctacttactgtccacacgaaca                    
                     gcgtgtttcgatccgagcctattcctagtg                    


//
Making a R in phase 2 intron
Making a G in phase 1 intron
>GL853792.1.pep
ELYLDESKQSYKELGFKRYNSLSIIPAAVGKPVRDVAAKAKAMGIHGNLSGDLLQSGGML
IVSKGGNKVLLHFIQSSPGDYVPLETILQTLGISADAHSSEKPQ
//
>GL853792.1.[1827:4731].sp
GAGCTTTATCTTGATGAAAGTAAGCAGAGTTACAAGGAACTGGGATTTAAGAGATACAAT
AGCTTGAGCATCATCCCAGCTGCTGTTGGGAAGCCAGTCCGGGATGTAGCTGCCAAGGCA
AAGGCTATGGGCATCCATGGGAACTTGTCCGGTGACCTCCTGCAAAGTGGAGGGATGTTA
ATTGTTAGCAAAGGTGGCAACAAGGTGCTGCTGCATTTCATCCAGAGCTCGCCTGGGGAT
TATGTTCCCCTGGAAACTATCCTCCAGACATTGGGCATCTCTGCAGATGCTCACTCCAGT
GAAAAGCCTCAG
//
GL853792.1	GeneWise	match	1827	4731	152.29	+	.	GL853792.1-genewise-prediction-1
GL853792.1	GeneWise	cds	1827	1879	0.00	+	0	GL853792.1-genewise-prediction-1
GL853792.1	GeneWise	intron	1880	3315	0.00	+	.	GL853792.1-genewise-prediction-1
GL853792.1	GeneWise	cds	3316	3379	0.00	+	1	GL853792.1-genewise-prediction-1
GL853792.1	GeneWise	intron	3380	3469	0.00	+	.	GL853792.1-genewise-prediction-1
GL853792.1	GeneWise	cds	3470	3545	0.00	+	0	GL853792.1-genewise-prediction-1
GL853792.1	GeneWise	intron	3546	4612	0.00	+	.	GL853792.1-genewise-prediction-1
GL853792.1	GeneWise	cds	4613	4731	0.00	+	2	GL853792.1-genewise-prediction-1
//

genewise output
Score 15.06 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000028_1.0  150 VVSKGGDKVLLHFVQK                                  
                     +  KG  K LLH   K                                  
                     IAGKGNSKSLLHHYPK                                  
GL853792.1     -7180 aggagaaatcccctca                                  
                     tcgagagacttaaaca                                  
                     ataaatcaacgttcaa                                  


//
>GL853792.1.pep
IAGKGNSKSLLHHYPK
//
>GL853792.1.[7180:7131].sp
ATAGCTGGAAAAGGAAATAGCAAATCACTCCTGCATCATTACCCAAAA
//
GL853792.1	GeneWise	match	7180	7133	15.06	-	.	GL853792.1-genewise-prediction-1
GL853792.1	GeneWise	cds	7180	7133	0.00	-	0	GL853792.1-genewise-prediction-1
//