genewise output
Score 31.59 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000023_1.0    6 TLPRPLSLCLSLCLCLCLAAAL                            
                     +LP  LSLCLSLCLCL  + +L                            
                     SLPVSLSLCLSLCLCLSASLSL                            
GL861565.1:sub292677 tccgtctctctctctctgtctc                            
                     ctctctctgtctgtgtccctct                            
                     tctccgtctctctctctctgtg                            


//
>GL861565.1:subseq(945174,300000).pep
SLPVSLSLCLSLCLCLSASLSL
//
>GL861565.1:subseq(945174,300000).[292677:292742].sp
TCTCTCCCTGTCTCCCTGTCTCTCTGTCTCTCTCTCTGTCTCTGTCTCTCTGCCTCTCTG
TCTCTG
//
GL861565.1:subseq(945174,300000)	GeneWise	match	292677	292742	31.59	+	.	GL861565.1:subseq(945174,300000)-genewise-prediction-1
GL861565.1:subseq(945174,300000)	GeneWise	cds	292677	292742	0.00	+	0	GL861565.1:subseq(945174,300000)-genewise-prediction-1
//

genewise output
Score 275.56 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000023_1.0   33 GSCRDKKNCKVVFSQQELRKRLTPLQYHVTQEKGTE              
                     GSCRD+KNCKVVFSQQELRKRLTPLQYHVTQEKGTE              
                     GSCRDRKNCKVVFSQQELRKRLTPLQYHVTQEKGTE              
GL861565.1:su-250009 gttagaaataggttccgcaaccaccctcgacgagag              
                     gcggagaagatttcaaatgagtcctaaatcaaagca              
                     gatgtagctggctcggagagagaccgctatggaatg              


SPP00000023_1.0   69                           AFEGEYTHHKDPGIYKCVVCGTP 
                                               AFEG+YT HKD G+YKCVVCGTP 
                                S:S[agt]       AFEGKYTSHKDRGMYKCVVCGTP 
GL861565.1:su-249901 AGGTGAGCT  Intron 1   TAGTgtggataacagcgatatggtgac 
                       <2-----[249899:24824-2> ctagaacgaaaggtaagttggcc 
                                               ctaaacatcattagcattttgtt 


SPP00000023_1.0   93 LF                          SETKFDSGS             
                     LF                          SETK+DSGS             
                     LF           K:N[aac]       SETKYDSGS             
GL861565.1:su-248173 ttAAGTAAGTT  Intron 2   CAGCtgaatgtgt             
                     tt  <2-----[248165:22314-2> cacaaacgc             
                     ac                          aacatctta             


SPP00000023_1.0  105                           WPSFHDVINSEAITFTDDFSYGM 
                                               WPSFHDVI+S+AITFTDDFS+GM 
                               G:G[ggt]        WPSFHDVISSDAITFTDDFSHGM 
GL861565.1:su-223115 GGTATGTT  Intron 3   CAGGTtcttcggaatggaataggttcga 
                      <1-----[223114:14605-1>  gcctaattgcactctcaatcagt 
                                               gcacttgatatatacttctctgg 


SPP00000023_1.0  129 HRVETSCSQ                       CGAHLGHIFDDGPRPTG 
                     HRVETSCSQ                       CGAHLGH+FDDGPRPTG 
                     HRVETSCSQ                       CGAHLGHVFDDGPRPTG 
GL861565.1:su-145984 caggaattcGTCAGTC  Intron 4   CAGtggccgcgtgggcccag 
                     agtacggca<0-----[145957:13101-0>ggcatgattaagcgccg 
                     tataacctg                       tttctgtttttgtaatc 


SPP00000023_1.0  155 KRYCINSAALSFTPADSSGTAEGGSGVASPAQADKAEL            
                     KRYCINSA+LSF+PA++  T +    +  PAQA K EL            
                     KRYCINSASLSFSPAENGNTEDNTINI--PAQAGKMEL            
GL861565.1:su-130963 aattaatgtttttcggagaaggaaaaa  cgcggaagc            
                     agagtaccctctcccaagacaaactat  ccacgatat            
                     aaccatctcgtcttggtgccacccccc  acatcaggg            


//
Making a S in phase 2 intron
Making a N in phase 2 intron
Making a G in phase 1 intron
>GL861565.1:subseq(945174,300000).pep
GSCRDRKNCKVVFSQQELRKRLTPLQYHVTQEKGTESAFEGKYTSHKDRGMYKCVVCGTP
LFNSETKYDSGSGWPSFHDVISSDAITFTDDFSHGMHRVETSCSQCGAHLGHVFDDGPRP
TGKRYCINSASLSFSPAENGNTEDNTINIPAQAGKMEL
//
>GL861565.1:subseq(945174,300000).[250009:130854].sp
GGGTCATGTAGGGATAGAAAGAACTGTAAGGTGGTCTTTTCCCAGCAGGAACTGAGAAAG
CGACTGACACCCCTCCAGTACCATGTAACTCAGGAGAAAGGAACTGAGAGTGCCTTTGAA
GGAAAATACACAAGTCACAAAGATCGTGGAATGTACAAATGTGTTGTTTGTGGGACTCCT
TTATTCAACTCAGAAACCAAATATGACTCTGGTTCAGGTTGGCCCTCATTCCATGATGTG
ATAAGTTCAGATGCAATTACATTCACTGATGACTTTTCCCATGGGATGCATAGAGTTGAA
ACAAGCTGCTCTCAGTGTGGTGCTCACCTTGGGCATGTTTTTGATGATGGGCCTCGACCA
ACTGGCAAAAGATACTGCATAAATTCCGCTTCCTTGTCTTTCTCTCCTGCGGAGAATGGG
AACACCGAAGACAACACCATCAACATCCCAGCCCAAGCTGGCAAAATGGAGCTG
//
GL861565.1:subseq(945174,300000)	GeneWise	match	250009	130856	276.56	-	.	GL861565.1:subseq(945174,300000)-genewise-prediction-1
GL861565.1:subseq(945174,300000)	GeneWise	cds	250009	249900	0.00	-	0	GL861565.1:subseq(945174,300000)-genewise-prediction-1
GL861565.1:subseq(945174,300000)	GeneWise	intron	249899	248244	0.00	-	.	GL861565.1:subseq(945174,300000)-genewise-prediction-1
GL861565.1:subseq(945174,300000)	GeneWise	cds	248243	248166	0.00	-	1	GL861565.1:subseq(945174,300000)-genewise-prediction-1
GL861565.1:subseq(945174,300000)	GeneWise	intron	248165	223144	0.00	-	.	GL861565.1:subseq(945174,300000)-genewise-prediction-1
GL861565.1:subseq(945174,300000)	GeneWise	cds	223143	223115	0.00	-	1	GL861565.1:subseq(945174,300000)-genewise-prediction-1
GL861565.1:subseq(945174,300000)	GeneWise	intron	223114	146056	0.00	-	.	GL861565.1:subseq(945174,300000)-genewise-prediction-1
GL861565.1:subseq(945174,300000)	GeneWise	cds	146055	145958	0.00	-	2	GL861565.1:subseq(945174,300000)-genewise-prediction-1
GL861565.1:subseq(945174,300000)	GeneWise	intron	145957	131015	0.00	-	.	GL861565.1:subseq(945174,300000)-genewise-prediction-1
GL861565.1:subseq(945174,300000)	GeneWise	cds	131014	130856	0.00	-	0	GL861565.1:subseq(945174,300000)-genewise-prediction-1
//