genewise output
Score 20.45 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000022_1.0    8 GRGQRAAPERAARLLWLL                                
                     GR Q AA     +L+W+L                                
                     GRRQEAATRETCKLIWVL                                
GL861683.1:sub188713 gaacgggaagatacatgt                                
                     gggaacccgacgattgtt                                
                     cggaatctaaacggtgtg                                


//
>GL861683.1:subseq(45306,300000).pep
GRRQEAATRETCKLIWVL
//
>GL861683.1:subseq(45306,300000).[188713:188766].sp
GGCAGGAGGCAAGAAGCTGCCACTAGAGAAACATGCAAGCTGATTTGGGTTTTG
//
GL861683.1:subseq(45306,300000)	GeneWise	match	188713	188766	20.45	+	.	GL861683.1:subseq(45306,300000)-genewise-prediction-1
GL861683.1:subseq(45306,300000)	GeneWise	cds	188713	188766	0.00	+	0	GL861683.1:subseq(45306,300000)-genewise-prediction-1
//

genewise output
Score 207.68 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000022_1.0   69 SEWQKKLTPEQFYVTREKGTEP                       PFSG 
                     ++W+KKLTPEQ+YVTREKGTE                        PFSG 
                     TDWKKKLTPEQYYVTREKGTEL                       PFSG 
GL861683.1:su-255219 agtaaatacgcttgaagagagcGTAAACT  Intron 1   CAGctag 
                     cagaaatccaaaatcgaagcat<0-----[255153:25000-0>ctgg 
                     tcgagagtaagccctaagaaag                       ccta 


SPP00000022_1.0   95 IYLNNKEAGMYHCVCCDSPLF                          SE 
                       LNN E+G+YHCVCCDSPLF                          SE 
                     DLLNNTESGIYHCVCCDSPLF           S:S[agt]       SE 
GL861683.1:su-249988 gctaaagtgatctgttgacctAGGTAAGAC  Intron 2   CAGTtg 
                     attaacacgtaagtggagctt  <2-----[249923:23288-2> ca 
                     cagttagaaatcttctccagt                          ta 


SPP00000022_1.0  119 KKYCSGTGWPSFSEAHGTSGSDESHTGILRRLDTSLGSARTEVVCKQ   
                     KK+CSGTGWPSF+EA+GTSGSDES + ILRR D SLGSAR EVVCKQ   
                     KKFCSGTGWPSFTEAYGTSGSDESKSNILRRPDYSLGSARVEVVCKQ   
GL861683.1:su-232872 aatttgagtcttaggtgatgtggaaaaacaccgttcgtgcggggtac   
                     aatgcgcggcctcacagccgcaagagattggcaactgccgtattgaa   
                     aaccatcggtacggttcatcatatactcggaacccgaataggttcag   


SPP00000022_1.0  166                        CEAHLGHVFPDGPGPNGQRFCINSVA 
                                            CEAHLGHVFPDGP P GQRFCINSVA 
                                            CEAHLGHVFPDGPEPIGQRFCINSVA 
GL861683.1:su-232731 GTGCATT  Intron 3   CAGtggctgcgtcggcgcagcattaaagg 
                     <0-----[232731:23062-0>gacatgattcagcactgagtgtagtc 
                                            tatcactgtatgtattagattcctga 


SPP00000022_1.0  192 LKFKP                                             
                     L FKP                                             
                     LTFKP                                             
GL861683.1:su-230545 catac                                             
                     tctac                                             
                     gatag                                             


//
Making a S in phase 2 intron
>GL861683.1:subseq(45306,300000).pep
TDWKKKLTPEQYYVTREKGTELPFSGDLLNNTESGIYHCVCCDSPLFSSEKKFCSGTGWP
SFTEAYGTSGSDESKSNILRRPDYSLGSARVEVVCKQCEAHLGHVFPDGPEPIGQRFCIN
SVALTFKP
//
>GL861683.1:subseq(45306,300000).[255219:230529].sp
ACTGACTGGAAAAAGAAATTGACTCCAGAACAGTACTACGTCACTAGAGAAAAGGGAACA
GAACTGCCCTTCAGTGGAGACCTATTGAATAATACAGAGTCAGGAATATATCACTGTGTT
TGCTGTGACAGCCCACTGTTTAGTTCTGAAAAAAAATTCTGCTCAGGTACCGGGTGGCCT
TCATTCACGGAGGCTTATGGCACATCTGGCTCAGATGAAAGTAAAAGCAATATCCTGAGG
CGACCAGACTACTCCCTGGGATCAGCTCGAGTGGAGGTTGTTTGCAAACAGTGTGAAGCT
CACTTAGGCCATGTGTTTCCAGATGGGCCTGAACCTATTGGACAGAGATTTTGTATCAAC
AGTGTGGCACTGACATTTAAACCG
//
GL861683.1:subseq(45306,300000)	GeneWise	match	255219	230531	207.68	-	.	GL861683.1:subseq(45306,300000)-genewise-prediction-1
GL861683.1:subseq(45306,300000)	GeneWise	cds	255219	255154	0.00	-	0	GL861683.1:subseq(45306,300000)-genewise-prediction-1
GL861683.1:subseq(45306,300000)	GeneWise	intron	255153	250001	0.00	-	.	GL861683.1:subseq(45306,300000)-genewise-prediction-1
GL861683.1:subseq(45306,300000)	GeneWise	cds	250000	249924	0.00	-	0	GL861683.1:subseq(45306,300000)-genewise-prediction-1
GL861683.1:subseq(45306,300000)	GeneWise	intron	249923	232880	0.00	-	.	GL861683.1:subseq(45306,300000)-genewise-prediction-1
GL861683.1:subseq(45306,300000)	GeneWise	cds	232879	232732	0.00	-	1	GL861683.1:subseq(45306,300000)-genewise-prediction-1
GL861683.1:subseq(45306,300000)	GeneWise	intron	232731	230624	0.00	-	.	GL861683.1:subseq(45306,300000)-genewise-prediction-1
GL861683.1:subseq(45306,300000)	GeneWise	cds	230623	230531	0.00	-	0	GL861683.1:subseq(45306,300000)-genewise-prediction-1
//