genewise output
Score 17.92 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000021_1.0   31 FSSRS-KYAHSSPWPAFTETIHADSVAKRP                    
                     +S RS KY  S P    TE     S A+RP                    
                     YSPRSNKYKQSEPLGGSTEMASVPSSARRP                    
GL841555.1:sub117940 ttcctaatacagccggtagagtgcttgaac                    
                     accgcaaaaagactggccatcctccccggc                    
                     ttccccgcgacacgaccaggcttccacaga                    


//
>GL841555.1:subseq(1423266,300000).pep
YSPRSNKYKQSEPLGGSTEMASVPSSARRP
//
>GL841555.1:subseq(1423266,300000).[117940:118029].sp
TATTCTCCCCGCTCCAACAAGTACAAGCAAAGCGAACCCCTGGGAGGCTCCACAGAGATG
GCCTCTGTTCCCTCCTCAGCCAGAAGGCCA
//
GL841555.1:subseq(1423266,300000)	GeneWise	match	117940	118029	17.92	+	.	GL841555.1:subseq(1423266,300000)-genewise-prediction-1
GL841555.1:subseq(1423266,300000)	GeneWise	cds	117940	118029	0.00	+	0	GL841555.1:subseq(1423266,300000)-genewise-prediction-1
//

genewise output
Score 181.42 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000021_1.0    1 MSFCSFFGGEVFQNHFEP                          VYVCA 
                     MSFCSF GGEVFQNHFEP                          VYVCA 
                     MSFCSF-GGEVFQNHFEP          G:G[ggt]        VYVCA 
GL841555.1:su-258457 attttt ggggtcactgcGGTAACTG  Intron 1   TAGGTgtgtg 
                     tctgct ggattaaatac <1-----[258405:24998-1>  tatgc 
                     gtcttt cagtcgcctga                          ccctc 


SPP00000021_1.0   25 KCGYELFSSRSKYAHSSPWPAFTETIHADSVAKRPEHNRSEALK      
                     KCGYELFSSRSKY HSSPWPAFTETIH DSV KRPE  R EALK      
                     KCGYELFSSRSKYQHSSPWPAFTETIHDDSVMKRPEFGRPEALK      
GL841555.1:su-249970 atgtgcttactatccttctcgtagaacggagaaccgtgccggta      
                     aggaattcggcaaaacccgcctcactaaagttagcatggcacta      
                     atctgctcttagtatctagtcctgaattctggggagttgaacaa      


SPP00000021_1.0   69                        VSCGKCGNGLGHEFLNDGPKPGQSRF 
                                            VSCGKCGNGLGHEF+NDGPK  QSRF 
                                            VSCGKCGNGLGHEFINDGPKKDQSRF 
GL841555.1:su-249838 GTAAGGG  Intron 2   CAGgttgatgagcgcgtaaggcaagctct 
                     <0-----[249838:24905-0>tcggaggagtgaattaagcaaaacgt 
                                            gctcgtctcgctgccttacggcgcct 


SPP00000021_1.0   95 XIFSSSLKFVPKGK                                    
                     XIFSSSLKF+PKG+                                    
                     XIFSSSLKFIPKGE                                    
GL841555.1:su-248973 tataatcatacagg                                    
                     gttggctattcaga                                    
                     aactcgggcttatg                                    


//
Making a G in phase 1 intron
>GL841555.1:subseq(1423266,300000).pep
MSFCSFGGEVFQNHFEPGVYVCAKCGYELFSSRSKYQHSSPWPAFTETIHDDSVMKRPEF
GRPEALKVSCGKCGNGLGHEFINDGPKKDQSRFXIFSSSLKFIPKGE
//
>GL841555.1:subseq(1423266,300000).[258457:248930].sp
ATGTCTTTCTGTTCTTTTGGCGGAGAGGTTTTCCAGAACCACTTTGAGCCAGGTGTCTAC
GTCTGTGCCAAATGTGGCTATGAGCTCTTTTCCAGTCGTTCAAAGTATCAACATTCCTCT
CCATGGCCTGCCTTCACTGAGACAATACATGATGACAGTGTGATGAAGCGGCCAGAGTTT
GGTCGGCCAGAAGCCTTAAAAGTGTCCTGTGGCAAGTGTGGCAATGGCCTGGGCCATGAG
TTCATCAATGATGGACCCAAGAAGGACCAGTCCCGCTTTTGAATATTCAGTAGCTCGCTG
AAGTTCATTCCTAAAGGTGAG
//
GL841555.1:subseq(1423266,300000)	GeneWise	match	258457	248932	181.42	-	.	GL841555.1:subseq(1423266,300000)-genewise-prediction-1
GL841555.1:subseq(1423266,300000)	GeneWise	cds	258457	258406	0.00	-	0	GL841555.1:subseq(1423266,300000)-genewise-prediction-1
GL841555.1:subseq(1423266,300000)	GeneWise	intron	258405	249988	0.00	-	.	GL841555.1:subseq(1423266,300000)-genewise-prediction-1
GL841555.1:subseq(1423266,300000)	GeneWise	cds	249987	249839	0.00	-	2	GL841555.1:subseq(1423266,300000)-genewise-prediction-1
GL841555.1:subseq(1423266,300000)	GeneWise	intron	249838	249052	0.00	-	.	GL841555.1:subseq(1423266,300000)-genewise-prediction-1
GL841555.1:subseq(1423266,300000)	GeneWise	cds	249051	248932	0.00	-	0	GL841555.1:subseq(1423266,300000)-genewise-prediction-1
//