genewise output Score 323.67 bits over entire alignment Scores as bits over a synchronous coding model Warning: The bits scores is not probablistically correct for single seqs See WWW help for more info SPP00000020_1.0 1 MWRSLGLALALCLLPSGGTESQDQSSLCKQPPAWSIRDQDPMLNSNGSV MWR L LALALCLLP GGTESQ QS+ CK+PP W IR + PMLNS G V MWRGLALALALCLLPYGGTESQVQSARCKEPPKWHIRGEYPMLNSLGRV GL841293.1:subs50000 atagcgcgcgctccctggagacgcagctagccatcaaggtcacatcgag tgggtctctctgttcaggcagatagcggaaccagatggaacttactggt ggacgatcgtctccctaaagcgaatcgcaataagcaatataggttgtag SPP00000020_1.0 50 TVVALLQASXYLCILQAS LEDLR TV+ALLQASXYLCILQAS LEDLR TVLALLQASXYLCILQAS K:R[agg] LEDLR GL841293.1:subs50147 agcgcccgattttaccgtAGGTAAGAT Intron 1 TAGGtggcc cttcttacggatgttacc <2-----[50203:53847]-2> taatg tgtcccaccacgctggcc gacga SPP00000020_1.0 74 VKLKKEGYSNISYIVVNHQGISSRLKYTHLKNKVSEHIPVYQQEENQTD VKL++EG+SNISYIVVNHQG S+L + LK+KVSE+I VYQQE NQ D VKLEREGFSNISYIVVNHQGNPSQLNFKELKDKVSENITVYQQEVNQQD GL841293.1:subs53864 gatgaggttaattaggaccgactctatagcagagtgaaagtccggaccg tatagagtcatcatttaaagaccatataataaatcaatctaaaataaaa gagaaaatctcatttcctgacataatcagaacatagtttttaaagcaat SPP00000020_1.0 123 VWTLLNGSKDDFLIYD CGRLVYH VWT+LNGSKDDFLIYD CGRLVYH VWTVLNGSKDDFLIYD R:R[aga] CGRLVYH GL841293.1:subs54011 gtagtagaaggtcatgAGGTATGTT Intron 2 TAGAtgccgtc tgcttaggaaatttaa <2-----[54061:54776]-2> gggttaa cgtgacccgtctcatc ttttgtt SPP00000020_1.0 147 LGLPFSFLTFPYVEEAIKIAYCEKKCGNCSLT LGLP++FLTF YVEEAIK+AYCEK CGNCS T LGLPYTFLTFSYVEEAIKVAYCEKSCGNCSYT GL841293.1:subs54799 cgtctatcatttggggaaggttgaatgattta tgtcacttctcataactatcagaagggagcac ttgtcctgtcttgaactattctaactaccacg SPP00000020_1.0 179 TLKDEDFCKRVSLATVDKTVETPSPH T+ DE FCK S ++ TP+ H TIDDESFCKNASSVAEEEPTRTPTSH GL841293.1:subs54895 GTATCTT Intron 3 CAGaagggattaagttgggggcaaacatc <0-----[54895:57384]-0>ctaaagtgaaccctcaaaccgcccca cattatttgtatgatgaaatactgcc SPP00000020_1.0 205 -------YHHEHHHNHGH--QHLGSSELSENQQP--GAPNAPTHPAPPG HH+HHH+H H H + +EN++P A H A G PPHHHLRHHHDHHHHHHHHQHHRHGHQPTENKKPEDSETAADVHSAQ-G GL841293.1:subs57463 ccccccccccgcccccccccccacgcccagaaacggtgaggggctgc g ccaaatgaaaaaaaaaaaaaaagagaaccaaaacaacacccatacca g ccttccctctcccctcttcgtcgtgtgtagtgaaattgattttttaa t SPP00000020_1.0 243 LHHHHK--HKGQHRQGHPENRDMP LHHHH+ H+ HP +++ P LHHHHESTHQQHRHTDHPGSQENP GL841293.1:subs57607 cccccgtaccccacagccgacgac taaaaaccaaaagacaacggaaac gttctgtacggcgcgttcgcaata // Making a R in phase 2 intron Making a R in phase 2 intron >GL841293.1:subseq(956305,300000).pep MWRGLALALALCLLPYGGTESQVQSARCKEPPKWHIRGEYPMLNSLGRVTVLALLQASXY LCILQASRLEDLRVKLEREGFSNISYIVVNHQGNPSQLNFKELKDKVSENITVYQQEVNQ QDVWTVLNGSKDDFLIYDRCGRLVYHLGLPYTFLTFSYVEEAIKVAYCEKSCGNCSYTTI DDESFCKNASSVAEEEPTRTPTSHPPHHHLRHHHDHHHHHHHHQHHRHGHQPTENKKPED SETAADVHSAQGLHHHHESTHQQHRHTDHPGSQENP // >GL841293.1:subseq(956305,300000).[50000:57678].sp ATGTGGAGAGGCCTGGCACTTGCCCTGGCTCTCTGTCTCCTCCCCTATGGAGGAACAGAG AGCCAGGTACAAAGTGCCCGGTGCAAAGAACCTCCAAAATGGCACATAAGAGGTGAATAT CCAATGCTGAATTCTCTGGGTAGAGTGACTGTGCTTGCCCTCCTCCAAGCCAGCTGATAC TTGTGCATTCTGCAGGCCTCCAGGTTGGAAGACCTGCGAGTGAAATTGGAAAGAGAAGGA TTTTCCAATATCTCATATATTGTTGTCAACCATCAGGGAAACCCATCTCAATTAAATTTC AAAGAGCTAAAAGACAAAGTTTCAGAGAATATTACTGTTTATCAACAAGAAGTGAACCAA CAAGATGTCTGGACTGTGTTAAACGGCAGCAAGGATGACTTTCTCATATATGACAGATGT GGTCGTCTTGTGTATCATCTTGGTTTGCCTTACACCTTTCTGACTTTCTCTTATGTGGAA GAAGCCATTAAAGTTGCTTACTGTGAAAAAAGCTGTGGAAACTGCTCATACACGACCATA GATGATGAAAGTTTTTGTAAGAATGCATCTTCGGTAGCTGAGGAAGAACCAACTAGAACC CCTACGTCCCACCCCCCCCATCATCACCTCCGCCATCACCATGACCACCACCACCATCAC CATCATCACCAGCATCACAGGCATGGGCATCAGCCTACAGAGAATAAGAAACCAGAAGAT TCTGAGACAGCTGCTGATGTTCATTCTGCACAAGGTCTGCATCATCACCATGAGTCTACA CACCAGCAGCACAGGCACACGGATCATCCCGGGAGCCAAGAAAATCCA // GL841293.1:subseq(956305,300000) GeneWise match 50000 57678 332.65 + . GL841293.1:subseq(956305,300000)-genewise-prediction-1 GL841293.1:subseq(956305,300000) GeneWise cds 50000 50202 0.00 + 0 GL841293.1:subseq(956305,300000)-genewise-prediction-1 GL841293.1:subseq(956305,300000) GeneWise intron 50203 53847 0.00 + . GL841293.1:subseq(956305,300000)-genewise-prediction-1 GL841293.1:subseq(956305,300000) GeneWise cds 53848 54060 0.00 + 1 GL841293.1:subseq(956305,300000)-genewise-prediction-1 GL841293.1:subseq(956305,300000) GeneWise intron 54061 54776 0.00 + . GL841293.1:subseq(956305,300000)-genewise-prediction-1 GL841293.1:subseq(956305,300000) GeneWise cds 54777 54894 0.00 + 1 GL841293.1:subseq(956305,300000)-genewise-prediction-1 GL841293.1:subseq(956305,300000) GeneWise intron 54895 57384 0.00 + . GL841293.1:subseq(956305,300000)-genewise-prediction-1 GL841293.1:subseq(956305,300000) GeneWise cds 57385 57678 0.00 + 0 GL841293.1:subseq(956305,300000)-genewise-prediction-1 // genewise output Score 24.60 bits over entire alignment Scores as bits over a synchronous coding model Warning: The bits scores is not probablistically correct for single seqs See WWW help for more info SPP00000020_1.0 204 HYHHEHHHNHGHQH H HH H H H H H HSHHRHTHTHTHTH GL841293.1:su-210919 ctccacacacacac acaagacacacaca caccacacacacac // >GL841293.1:subseq(956305,300000).pep HSHHRHTHTHTHTH // >GL841293.1:subseq(956305,300000).[210919:210876].sp CACTCACACCACAGACACACACACACACACACACACACACAC // GL841293.1:subseq(956305,300000) GeneWise match 210919 210878 24.60 - . GL841293.1:subseq(956305,300000)-genewise-prediction-1 GL841293.1:subseq(956305,300000) GeneWise cds 210919 210878 0.00 - 0 GL841293.1:subseq(956305,300000)-genewise-prediction-1 //