genewise output Score 786.80 bits over entire alignment Scores as bits over a synchronous coding model Warning: The bits scores is not probablistically correct for single seqs See WWW help for more info SPP00000019_1.0 185 RQADGRKVLRSSIREFLCSEAMFHLGVPTTRAGACVTSESTVVRDVFYD RQADGRKVLRSSIREFLCSEAMFHLG+PTTRAG+CVTSES V+RD++YD RQADGRKVLRSSIREFLCSEAMFHLGIPTTRAGSCVTSESKVIRDIYYD GL861545.1:subs50000 acgggcagcctaaagtctaggatccgacaacggttgatgtagacgattg gacaggattgcgtgattggacttatgtcccgcgcgtccacattgataaa gacccgacgccccggcgccacgccgcccgcgccgcgccgcaccgctctc SPP00000019_1.0 234 GNPKYEQCTVVLRVASTFI FGSF GNPKYE C VVLR+ASTF+ FGSF GNPKYENCAVVLRIASTFL R:R[aga] FGSF GL861545.1:subs50147 gacatgatgggccagtatcAGGTGAGGG Intron 1 CAGAtgtt gacaaaagctttgtccctt <2-----[50206:50968]-2> tgct cccgtgccgggggacgtcg tctt SPP00000019_1.0 258 EIFKSADEHTGRAGPSVGRNDIRVQLLDYVISSFYPEIQAAHASDSVQR EIFK DE TGR GPSVGRNDIR+Q+LDYVI SFYPEIQAA A DSVQR EIFKPQDEQTGRKGPSVGRNDIRIQMLDYVIGSFYPEIQAAFAEDSVQR GL861545.1:subs50982 gataccggcagcagcaggcagacacacgtgagattcgacggtgggagca attacaaaacggagcgtggaatgtattaattggtacatacctcaagtag gttgcataaggcgcctgcgtccgcggtctcccttcaacagctaaccggg SPP00000019_1.0 307 NAAFFRE VTRRTARMVAEWQCVGFCH NAAFFRE VTRRTAR+VA+WQCVGFCH NAAFFRE VTRRTARLVADWQCVGFCH GL861545.1:subs51129 aggttcgGTGGGTA Intron 2 CAGgaccagacgggtctggttc accttga<0-----[51150:52120]-0>tcggccgttcagagtgtga taccccg ctgcgggggccggtgccct SPP00000019_1.0 333 GVLNTDNMSILGLTIDYGPFGFLD GVLNTDNMSI+GLTIDYGPFGF+D GVLNTDNMSIVGLTIDYGPFGFMD R:R[agg] GL861545.1:subs52178 ggcaagaaaaggcaagtgctgtagAGGTGAGTC Intron 3 gttacaatgttgtctaagctgtta <2-----[52252:52329] cgtcaccgctgacctctgctgcgc SPP00000019_1.0 357 YDPDHVCNASDNTGRYAYSKQPEVCRWNLRKLAEALQPELPLELG YDPDH+CN SD GRYAY+KQPEVC+WNL+KLAEAL PELPLEL YDPDHICNTSDTGGRYAYNKQPEVCKWNLQKLAEALVPELPLELS GL861545.1:subs52327 CAGGtgcgcataatgaggctgtaaccggtataccacgggcgcgcccgca -2> aacaatgaccacgggacaaaacatgagataatcacttcatctatg cccccccccgcggccccccggcggcggcggggtgcggcggcggcc SPP00000019_1.0 403 EAILAEEFDAEFQRHYLQKMRRKLGLVQVELEEDGALVSKLLETMHLT E IL EE+DAEF+R+YL KMR+KLGL+++ELEED LVS LLETMH T EPILEEEYDAEFERYYLHKMRQKLGLIRLELEEDRELVSALLETMHFT GL861545.1:subs52466 gcacgggtgggtgatttcaaacacgcaccgcgggcgcgtgccgaacta acttaaaaacatagaataatgaatgttgtataaagattccttactatc gccggggcccgtggctgcggggggtgcgggcggcgggggctagcgcca SPP00000019_1.0 451 ADFTNTFYLLSSFPVELESPGLA ADFTNTF LLSSF V LE A G:G[ggg] ADFTNTFNLLSSFSVALEPSQDA GL861545.1:subs52610 GGTCAGTG Intron 4 CAGGGggtaaatatcatttggcgcacgg <1-----[52611:52700]-1> catcactattgctctctacgaac atcactctagcccggcggccgcc SPP00000019_1.0 475 EFLARLMEQCASLEELRLAFRPQMDP FL +L +QCASLEEL+LAFRPQMDP RFLDQLAQQCASLEELKLAFRPQMDP R:R[agg] GL861545.1:subs52772 cttgccgcctgttggcacgtaccagcAGGTAGTTG Intron 5 gttaatcaagcctaatatctgcatac <2-----[52852:54168] ccgcggtggcccgaagggccggggtc SPP00000019_1.0 501 QLSMMLMLAQSNPQLFALMGTRAGIARELERVEQQSRLEQLSAAE QLSMMLMLAQSNPQLFAL+GT+A I +ELER+EQ S+L+ L E QLSMMLMLAQSNPQLFALIGTKASINKELERIEQSSKLQHLLPTE GL861545.1:subs54166 TAGGcctaacacgctaccctgtagaagaaaagcgcagcttacccttcag -2> atctttttcacacattcttgcacgtaaatagtaaccataattcca gctgggggtgctggcttatggggcctggcaccggccgggcggccg SPP00000019_1.0 547 LQSRNQGHWADWLQAY ARLDKDL L SRN+ W WLQ Y ARL++D+ LISRNRERWETWLQRY R:R[agg] ARLERDV GL861545.1:subs54305 caacacgctgatccatAGGTGAGGA Intron 6 CAGGgctgagg ttggagaggacgtaga <2-----[54355:54538]-2> cgtagat cccacggcggggcgac cgggacg SPP00000019_1.0 571 EGAGDAAAWQAEHVRVMHANNPKYVLRNYIAQNAIEAAERGDFSE + W E VRVM +NNPKYVLRNYIAQNAIEAAE+GDFSE QSTSGPDTWGMERVRVMRSNNPKYVLRNYIAQNAIEAAEQGDFSE GL861545.1:subs54561 caaagcgatgagcgagactaacatgcaatagcagaggggcggttg agcggcacggtagtgttgcaacaattgaatcaactaccaagatca gcatcgcggcggccacgcccccgcgggccccgtccacaggaccag SPP00000019_1.0 616 VRRVLKLLETPYHCEAGAATDAEAT- VRRVLKLLE PY + AA D EA VRRVLKLLEKPYCEDWEAALDIEAAG GL861545.1:subs54696 GTATGGG Intron 7 CAGgaagtaccgacttggtgggcgagggg <0-----[54696:54780]-0>tggttattaacagaagacctataccg ggggggggggcctgcgggcgcagcac SPP00000019_1.0 641 ------EADGADGRQRSYSSKPPLWAAELCVT + + G + SYS KPPLWAAELCVT PVETAQSGEASGGSRPSYSRKPPLWAAELCVT GL861545.1:subs54859 cggagcagggtggaccttaaaccctgggctga ctaccaggaccggggccaggacctgccatgtc aggcagtggcatcccacccagcgcgtaggtgg // Making a R in phase 2 intron Making a R in phase 2 intron Making a G in phase 1 intron Making a R in phase 2 intron Making a R in phase 2 intron >GL861545.1:subseq(464228,300000).pep RQADGRKVLRSSIREFLCSEAMFHLGIPTTRAGSCVTSESKVIRDIYYDGNPKYENCAVV LRIASTFLRFGSFEIFKPQDEQTGRKGPSVGRNDIRIQMLDYVIGSFYPEIQAAFAEDSV QRNAAFFREVTRRTARLVADWQCVGFCHGVLNTDNMSIVGLTIDYGPFGFMDRYDPDHIC NTSDTGGRYAYNKQPEVCKWNLQKLAEALVPELPLELSEPILEEEYDAEFERYYLHKMRQ KLGLIRLELEEDRELVSALLETMHFTGADFTNTFNLLSSFSVALEPSQDARFLDQLAQQC ASLEELKLAFRPQMDPRQLSMMLMLAQSNPQLFALIGTKASINKELERIEQSSKLQHLLP TELISRNRERWETWLQRYRARLERDVQSTSGPDTWGMERVRVMRSNNPKYVLRNYIAQNA IEAAEQGDFSEVRRVLKLLEKPYCEDWEAALDIEAAGPVETAQSGEASGGSRPSYSRKPP LWAAELCVT // >GL861545.1:subseq(464228,300000).[50000:54954].sp AGGCAAGCCGACGGCCGGAAAGTCCTGCGCTCCAGCATCAGGGAGTTCCTGTGCAGCGAA GCCATGTTCCACCTGGGCATCCCCACGACCCGGGCCGGCTCGTGCGTGACCTCCGAGTCC AAAGTCATCCGGGACATTTACTATGACGGCAACCCCAAGTATGAGAACTGCGCGGTGGTG CTGCGGATAGCCTCGACTTTCCTGAGATTTGGCTCTTTTGAGATTTTTAAGCCCCAAGAT GAACAAACGGGGCGCAAGGGCCCCAGTGTGGGCCGGAATGACATCCGGATCCAGATGCTT GACTATGTCATCGGCAGTTTTTACCCAGAAATCCAAGCGGCCTTTGCAGAAGACAGCGTG CAGAGGAATGCAGCCTTCTTCCGCGAGGTCACTCGGCGCACGGCGAGGCTGGTGGCCGAC TGGCAGTGTGTGGGCTTCTGCCATGGCGTGCTTAACACAGACAACATGAGCATTGTGGGA CTCACCATTGACTATGGGCCCTTTGGGTTCATGGACAGGTACGACCCCGACCACATCTGC AACACCTCGGACACGGGGGGCCGCTACGCCTACAACAAGCAGCCCGAGGTGTGCAAGTGG AACCTGCAGAAGCTGGCTGAGGCCCTGGTGCCCGAGCTGCCCCTGGAGCTCAGCGAGCCC ATCCTGGAGGAGGAGTACGACGCCGAGTTTGAGAGGTACTATTTGCACAAGATGAGGCAG AAGCTGGGTCTGATCCGGCTGGAGCTCGAGGAGGACCGGGAGCTGGTGTCGGCCCTTCTA GAGACCATGCACTTCACAGGGGCAGATTTCACAAACACTTTCAATTTACTGAGCTCCTTC TCGGTGGCCCTGGAGCCCAGCCAGGACGCCCGCTTCTTGGACCAGCTGGCTCAGCAGTGC GCCTCCTTGGAAGAACTGAAGCTGGCCTTCAGGCCGCAGATGGATCCCAGGCAGCTCTCT ATGATGCTGATGCTGGCTCAGTCCAATCCGCAGCTCTTTGCTTTAATTGGGACGAAGGCG AGCATCAATAAGGAGCTCGAACGCATCGAGCAGTCCTCCAAGCTGCAGCACTTGTTGCCC ACCGAGCTCATCAGCCGAAACCGGGAGCGCTGGGAGACGTGGCTCCAGAGATACAGGGCC CGGTTGGAGAGAGACGTGCAGAGCACAAGTGGCCCGGACACGTGGGGCATGGAGCGCGTC AGAGTCATGCGCTCCAACAACCCCAAGTACGTGCTGAGGAACTACATCGCCCAGAATGCC ATCGAAGCCGCAGAGCAGGGAGACTTCTCAGAGGTGAGGAGGGTGTTGAAGCTGCTGGAG AAGCCCTACTGTGAGGACTGGGAGGCGGCCCTGGACATAGAGGCCGCAGGCCCAGTGGAG ACCGCACAGAGTGGGGAGGCCTCAGGTGGCAGCCGCCCATCCTACAGCAGAAAGCCCCCG CTCTGGGCTGCAGAGCTGTGTGTGACG // GL861545.1:subseq(464228,300000) GeneWise match 50000 54954 792.79 + . GL861545.1:subseq(464228,300000)-genewise-prediction-1 GL861545.1:subseq(464228,300000) GeneWise cds 50000 50205 0.00 + 0 GL861545.1:subseq(464228,300000)-genewise-prediction-1 GL861545.1:subseq(464228,300000) GeneWise intron 50206 50968 0.00 + . GL861545.1:subseq(464228,300000)-genewise-prediction-1 GL861545.1:subseq(464228,300000) GeneWise cds 50969 51149 0.00 + 1 GL861545.1:subseq(464228,300000)-genewise-prediction-1 GL861545.1:subseq(464228,300000) GeneWise intron 51150 52120 0.00 + . GL861545.1:subseq(464228,300000)-genewise-prediction-1 GL861545.1:subseq(464228,300000) GeneWise cds 52121 52251 0.00 + 0 GL861545.1:subseq(464228,300000)-genewise-prediction-1 GL861545.1:subseq(464228,300000) GeneWise intron 52252 52329 0.00 + . GL861545.1:subseq(464228,300000)-genewise-prediction-1 GL861545.1:subseq(464228,300000) GeneWise cds 52330 52610 0.00 + 1 GL861545.1:subseq(464228,300000)-genewise-prediction-1 GL861545.1:subseq(464228,300000) GeneWise intron 52611 52700 0.00 + . GL861545.1:subseq(464228,300000)-genewise-prediction-1 GL861545.1:subseq(464228,300000) GeneWise cds 52701 52851 0.00 + 2 GL861545.1:subseq(464228,300000)-genewise-prediction-1 GL861545.1:subseq(464228,300000) GeneWise intron 52852 54168 0.00 + . GL861545.1:subseq(464228,300000)-genewise-prediction-1 GL861545.1:subseq(464228,300000) GeneWise cds 54169 54354 0.00 + 1 GL861545.1:subseq(464228,300000)-genewise-prediction-1 GL861545.1:subseq(464228,300000) GeneWise intron 54355 54538 0.00 + . GL861545.1:subseq(464228,300000)-genewise-prediction-1 GL861545.1:subseq(464228,300000) GeneWise cds 54539 54695 0.00 + 1 GL861545.1:subseq(464228,300000)-genewise-prediction-1 GL861545.1:subseq(464228,300000) GeneWise intron 54696 54780 0.00 + . GL861545.1:subseq(464228,300000)-genewise-prediction-1 GL861545.1:subseq(464228,300000) GeneWise cds 54781 54954 0.00 + 0 GL861545.1:subseq(464228,300000)-genewise-prediction-1 // genewise output Score 23.93 bits over entire alignment Scores as bits over a synchronous coding model Warning: The bits scores is not probablistically correct for single seqs See WWW help for more info SPP00000019_1.0 61 EAPPPGPEGAPSAPRPVPGACFTRVQPTPLRQPRLVALSEPALALLG E P P +PSA R G + R +P R L+ SEPA +G EPESPRPPRSPSAQRAGLGGGLRRAEPLGARPEVLLGYSEPAAIKVG GL861545.1:su-209778 gcgtccccaactgccggcgggcaaggccggccggccgttgcggaagg acaccgccggcccagcgtgggtggcactgcgcatttgacaccctatg gggatcatgctcagtgggaacgagagggagccgtcgcccggtctaaa // >GL861545.1:subseq(464228,300000).pep EPESPRPPRSPSAQRAGLGGGLRRAEPLGARPEVLLGYSEPAAIKVG // >GL861545.1:subseq(464228,300000).[209778:209636].sp GAGCCGGAGTCACCTCGCCCACCTAGGAGCCCTTCCGCACAGCGTGCGGGGCTGGGAGGA GGCCTGAGAAGGGCAGAGCCGCTGGGAGCGCGCCCCGAGGTTCTCCTGGGCTACTCCGAG CCGGCTGCCATTAAAGTAGGA // GL861545.1:subseq(464228,300000) GeneWise match 209778 209638 23.93 - . GL861545.1:subseq(464228,300000)-genewise-prediction-1 GL861545.1:subseq(464228,300000) GeneWise cds 209778 209638 0.00 - 0 GL861545.1:subseq(464228,300000)-genewise-prediction-1 //