genewise output Score 779.92 bits over entire alignment Scores as bits over a synchronous coding model Warning: The bits scores is not probablistically correct for single seqs See WWW help for more info SPP00000018_1.0 60 RQELALKTLGTDGLFLFSSLDTDGDMYISPEEFKPIAEKLTGSCS RQE ALK+LGT+GL+LFSSLD D D+ ISPEEFKPIAEK TGS RQEAALKSLGTEGLYLFSSLDLDKDLSISPEEFKPIAEKFTGSGK GL849746.1:sub126306 acgggtatcgaggttctttcgtgagctaacggtacaggatagaga gaacctactgcagtattcctataaatctgcaatactcaatcggga gggaaagcggaacacgcctgtacacgtccaagcgcttaacattga SPP00000018_1.0 105 TQTGVQWCSHSSLQPQLPWLNXS + P L++S V:G[ggt] LMPVTDF-EEEEKSP----LDSS GL849746.1:sub126441 GGTTGGAT Intron 1 TAGGTtacgagt ggggatc cgta <1-----[126442:12918-1> ttctcat aaaaacc tacg ggtcact gaaggaa ctct SPP00000018_1.0 129 SCLSLLRSTPAASCEEEELPPDPSEETLTIEARFQPLLPETMTKSKDGF L + E L EE L+I ARFQPLL ETMTKSKDGF ETLYI----------DENLS---TEEKLSIVARFQPLLLETMTKSKDGF GL849746.1:sub129245 gacta ggact aggactaggctcccccgaaaaaaggt actat aaatc caaatcttcgtactttactcagaagt gaaca cacgc agaggcaacacgcgcagcgggcattt SPP00000018_1.0 178 LG VSRLALSGLRNWTAAASPSAVFAT LG VS LALSGLR W AS F+ LG VSHLALSGLREWRTPASQLMEFSA GL849746.1:sub129353 cgGTGAGTA Intron 2 TAGgtccgctgccgtaacgtccagttg tg<0-----[129359:13057-0>tcatctcgtgaggccccattatcc gg ttcccgtggaggggccagcggctt SPP00000018_1.0 204 RHFQPFLPP-PGQELGEPWWIIPSELSMFTGYLSNNRFYPPPPKGKE R F+PFLPP ELGEPWWIIPSELS+FTGYLSNNRFYPPPPKGKE RQFKPFLPPRSNMELGEPWWIIPSELSIFTGYLSNNRFYPPPPKGKE GL849746.1:sub130652 cctactcccaaaagcggcttaacagtaatagtctaacttccccagag gatacttccggatatgacggttcgatgttcgatcaagtaccccagaa cgcgtcgccaccgggagcggccctgaccccacccctccctttcacag SPP00000018_1.0 250 VIIHRLLSMFHPRPFVKTRFAPQGAV VIIHRLLSMFHPRPFVKTRF PQGAV VIIHRLLSMFHPRPFVKTRFGPQGAV GL849746.1:sub130793 GTAACAA Intron 3 CAGgaacaccaatccactgaactgccggg <0-----[130793:13117-0>tttagttgttacgcttacgtgcagct ccccaggcgctagctggcctgggccg SPP00000018_1.0 276 ACLTAISDFYYTVMF IHAEFQLS ACLTA+SD YYTV F IHAEFQL+ ACLTAVSDAYYTVAF R:R[agg] IHAEFQLN GL849746.1:sub131257 gtcaggaggttaggtAGGTGAGCT Intron 4 CAGGacggtcca cgtcctgacaactct <2-----[131304:13263-2> tacatata cccaccttcccagcc cccgcgcc SPP00000018_1.0 300 EPPDFPFWFSPAQFTGHIILSKDATHVRDFRLFVPNH EPP FPFWFSP QFTGHIIL+KDATHVRDF+LFVPNH EPPHFPFWFSPGQFTGHIILTKDATHVRDFKLFVPNH GL849746.1:sub132656 gccctcttttcgctagcaacaaggacgcgtactgcac accatctgtccgatcgatttcaaccatgatatttcaa gacctccgctaagctacccccaccccggccgctgccc SPP00000018_1.0 337 SLNVDMEWLYGASESSNMEVDIG SLNVDMEWLYGA+E SNMEVDIG R:R[agg] SLNVDMEWLYGANEKSNMEVDIG GL849746.1:sub132767 AGGTAAGAT Intron 5 CAGGtcaggagtttggagaaaagggag <2-----[132769:13483-2> ctatatagtagcaaagatatatg tgcacggggtattggccgatccc SPP00000018_1.0 361 YIPQ MELEATGPSVPSVILDEDGSMI Y+PQ MELE+ GPSVPSVI DE+G++I YLPQ MELESQGPSVPSVIQDENGNVI GL849746.1:sub134904 tcccGTATGTG Intron 6 CAGagcgtcgctgctgacggagaga atca<0-----[134916:14215-0>tatacagcctccttaaaagatt cctg ggtacacctgatgcatgtctat SPP00000018_1.0 387 DSHLPSGEPLQFVFEEIKWQQELSWEEAARRLEVAMYPFKK DS LPSGEP+QF+FE+I WQ+ELSWE+A ++LEVAMYPFKK DSRLPSGEPIQFMFEDIVWQRELSWEKATQQLEVAMYPFKK GL849746.1:sub142221 gaccctggcactatggagtccgcatgagacccgggatctaa aggtccgactatttaattgagatggaaccaatatctactaa cccgttggccgtgtgttgggggccgggacgggatcgcccgg SPP00000018_1.0 428 VSYLPFTEAFDRAKAENKLVHSILLW V+YLPFTEAFDRAKAENKLVHSILLW VTYLPFTEAFDRAKAENKLVHSILLW GL849746.1:sub142344 GTGAGAC Intron 7 TAGgatcctaggtgcgaggaatgctacct <0-----[142344:14275-0>tcatctcactagcacaaattactttg cccgactaatcacgtacaagcccgcg SPP00000018_1.0 454 GALDDQSCX SGRTLRETVLESSP GALDDQSCX SGRTLRETVLESSP GALDDQSCX G:G[ggt] SGRTLRETVLESSP GL849746.1:sub142837 ggtggctttGGTGAAGG Intron 8 CAGGTtgcaccgagcgatc gctaaacgg <1-----[142865:14311-1> cggctgacttagcc gtgtcacca aggtcggacgatgc SPP00000018_1.0 478 ILTLLNESFISTWSLVKELEELQ NNQ ILTLLN++FIS+WSLVKELEELQ N+Q ILTLLNDNFISSWSLVKELEELQ NSQ GL849746.1:sub143156 acaccagataaattcgagtggccGTGAGTA Intron 9 TAGaac ttcttaaattgggcttaataata<0-----[143225:14332-0>aga cctcccccccccgccggggggtg tca SPP00000018_1.0 504 ENSSHQKLAGLHLEKYSFPVEMMICLPNGTV EN H+ LA LHLEKYSFPVEM+ICLPNGTV ENEFHKVLANLHLEKYSFPVEMLICLPNGTV GL849746.1:sub143337 gagtcagcgacccgatatcggacattcagag aaataattcatataaagtctatttgtcagct ataccaggtcgcgagccttagggccactgtg SPP00000018_1.0 535 VHHINANYFLDITSVKPEEIESNLFS VHHINANYFLDITS+KPE+IE+ +FS VHHINANYFLDITSMKPEDIETGVFS GL849746.1:sub143430 GTATGTG Intron 10 CAGgccaagattcgaataacggagaggta <0-----[143430:14627-0>taatacaattatcctacaatacgttg cttctctctgcctcggaattgttctc SPP00000018_1.0 561 FSSTFEDPSTATYMQFLKEGLRRGLPLLQP FSSTFEDPST TY QFLKEGLRR P LQP FSSTFEDPSTTTYAQFLKEGLRRAQPFLQP GL849746.1:sub146357 tttatggctaaatgctcaggcccgcctccc tccctaacccccacattaagtggcacttac cctctatacacctagcgggatcacgcccgc // Making a G in phase 1 intron Making a R in phase 2 intron Making a R in phase 2 intron Making a G in phase 1 intron >GL849746.1:subseq(0,300000).pep RQEAALKSLGTEGLYLFSSLDLDKDLSISPEEFKPIAEKFTGSGKGLMPVTDFEEEEKSP LDSSETLYIDENLSTEEKLSIVARFQPLLLETMTKSKDGFLGVSHLALSGLREWRTPASQ LMEFSARQFKPFLPPRSNMELGEPWWIIPSELSIFTGYLSNNRFYPPPPKGKEVIIHRLL SMFHPRPFVKTRFGPQGAVACLTAVSDAYYTVAFRIHAEFQLNEPPHFPFWFSPGQFTGH IILTKDATHVRDFKLFVPNHRSLNVDMEWLYGANEKSNMEVDIGYLPQMELESQGPSVPS VIQDENGNVIDSRLPSGEPIQFMFEDIVWQRELSWEKATQQLEVAMYPFKKVTYLPFTEA FDRAKAENKLVHSILLWGALDDQSCXGSGRTLRETVLESSPILTLLNDNFISSWSLVKEL EELQNSQENEFHKVLANLHLEKYSFPVEMLICLPNGTVVHHINANYFLDITSMKPEDIET GVFSFSSTFEDPSTTTYAQFLKEGLRRAQPFLQP // >GL849746.1:subseq(0,300000).[126306:146446].sp AGGCAGGAGGCAGCATTAAAGTCCCTGGGGACAGAAGGCTTATACCTGTTCTCCTCTCTG GATTTAGACAAAGACCTGTCTATCAGCCCAGAAGAGTTCAAGCCCATTGCTGAAAAATTC ACAGGTAGTGGGAAAGGTTTGATGCCTGTCACAGACTTTGAGGAAGAAGAGAAGTCACCA CTCGATTCCAGTGAGACACTATACATAGACGAAAACCTGTCCACAGAGGAAAAGCTGTCC ATAGTAGCCCGATTCCAGCCCCTGCTCCTAGAGACCATGACGAAGAGCAAAGATGGTTTT CTGGGGGTTTCTCACCTCGCCCTGTCTGGGCTGCGAGAGTGGAGGACGCCCGCCTCACAG CTCATGGAGTTCTCTGCTCGCCAGTTCAAGCCTTTCCTGCCCCCCAGAAGCAACATGGAG CTGGGAGAGCCCTGGTGGATCATCCCCAGTGAGTTAAGCATCTTCACCGGATACCTCTCC AACAATCGCTTCTACCCTCCTCCTCCCAAAGGCAAAGAGGTCATCATCCACAGACTGCTG AGCATGTTCCATCCAAGGCCCTTTGTGAAGACCCGCTTTGGGCCGCAGGGCGCCGTGGCC TGCCTCACAGCCGTCAGTGATGCCTACTACACAGTGGCCTTCAGGATCCACGCCGAGTTC CAGCTCAACGAGCCACCCCACTTTCCCTTCTGGTTCTCTCCAGGACAGTTCACTGGACAC ATCATCCTCACCAAAGACGCCACCCACGTGCGGGACTTCAAGCTCTTTGTGCCCAACCAC AGGTCTCTGAACGTAGACATGGAGTGGTTGTATGGAGCTAATGAGAAGAGCAACATGGAA GTTGACATCGGCTACCTCCCTCAGATGGAGCTTGAATCCCAAGGCCCCTCTGTGCCATCT GTGATCCAAGATGAGAATGGCAATGTAATTGACAGCCGCCTGCCTTCTGGGGAGCCCATC CAGTTTATGTTTGAGGATATTGTGTGGCAGCGGGAGCTCAGCTGGGAGAAGGCAACCCAG CAGCTGGAAGTTGCCATGTACCCCTTCAAGAAGGTCACCTACCTGCCATTCACTGAAGCA TTTGACCGAGCCAAGGCTGAAAACAAATTAGTGCACTCCATCCTGCTCTGGGGGGCTTTG GATGACCAATCCTGCTGAGGTTCAGGGCGGACTCTCCGGGAGACAGTCCTGGAAAGTTCG CCCATCCTCACTCTCCTCAACGACAACTTCATCAGCAGCTGGTCCCTCGTGAAGGAGTTG GAGGAGCTTCAGAATAGCCAAGAAAATGAATTCCACAAAGTGCTGGCTAACCTGCACCTG GAAAAGTACAGCTTTCCTGTAGAGATGCTGATCTGCTTACCCAATGGGACTGTGGTCCAT CATATCAATGCCAATTACTTTCTGGACATCACTTCCATGAAGCCAGAAGATATTGAGACT GGTGTCTTTAGCTTCTCCTCTACCTTTGAAGATCCATCCACAACCACCTATGCACAGTTC CTGAAGGAGGGACTTCGCCGAGCCCAGCCCTTCCTCCAGCCC // GL849746.1:subseq(0,300000) GeneWise match 126306 146446 793.90 + . GL849746.1:subseq(0,300000)-genewise-prediction-1 GL849746.1:subseq(0,300000) GeneWise cds 126306 126441 0.00 + 0 GL849746.1:subseq(0,300000)-genewise-prediction-1 GL849746.1:subseq(0,300000) GeneWise intron 126442 129188 0.00 + . GL849746.1:subseq(0,300000)-genewise-prediction-1 GL849746.1:subseq(0,300000) GeneWise cds 129189 129358 0.00 + 2 GL849746.1:subseq(0,300000)-genewise-prediction-1 GL849746.1:subseq(0,300000) GeneWise intron 129359 130579 0.00 + . GL849746.1:subseq(0,300000)-genewise-prediction-1 GL849746.1:subseq(0,300000) GeneWise cds 130580 130792 0.00 + 0 GL849746.1:subseq(0,300000)-genewise-prediction-1 GL849746.1:subseq(0,300000) GeneWise intron 130793 131178 0.00 + . GL849746.1:subseq(0,300000)-genewise-prediction-1 GL849746.1:subseq(0,300000) GeneWise cds 131179 131303 0.00 + 0 GL849746.1:subseq(0,300000)-genewise-prediction-1 GL849746.1:subseq(0,300000) GeneWise intron 131304 132630 0.00 + . GL849746.1:subseq(0,300000)-genewise-prediction-1 GL849746.1:subseq(0,300000) GeneWise cds 132631 132768 0.00 + 1 GL849746.1:subseq(0,300000)-genewise-prediction-1 GL849746.1:subseq(0,300000) GeneWise intron 132769 134833 0.00 + . GL849746.1:subseq(0,300000)-genewise-prediction-1 GL849746.1:subseq(0,300000) GeneWise cds 134834 134915 0.00 + 1 GL849746.1:subseq(0,300000)-genewise-prediction-1 GL849746.1:subseq(0,300000) GeneWise intron 134916 142154 0.00 + . GL849746.1:subseq(0,300000)-genewise-prediction-1 GL849746.1:subseq(0,300000) GeneWise cds 142155 142343 0.00 + 0 GL849746.1:subseq(0,300000)-genewise-prediction-1 GL849746.1:subseq(0,300000) GeneWise intron 142344 142758 0.00 + . GL849746.1:subseq(0,300000)-genewise-prediction-1 GL849746.1:subseq(0,300000) GeneWise cds 142759 142864 0.00 + 0 GL849746.1:subseq(0,300000)-genewise-prediction-1 GL849746.1:subseq(0,300000) GeneWise intron 142865 143111 0.00 + . GL849746.1:subseq(0,300000)-genewise-prediction-1 GL849746.1:subseq(0,300000) GeneWise cds 143112 143224 0.00 + 2 GL849746.1:subseq(0,300000)-genewise-prediction-1 GL849746.1:subseq(0,300000) GeneWise intron 143225 143327 0.00 + . GL849746.1:subseq(0,300000)-genewise-prediction-1 GL849746.1:subseq(0,300000) GeneWise cds 143328 143429 0.00 + 0 GL849746.1:subseq(0,300000)-genewise-prediction-1 GL849746.1:subseq(0,300000) GeneWise intron 143430 146278 0.00 + . GL849746.1:subseq(0,300000)-genewise-prediction-1 GL849746.1:subseq(0,300000) GeneWise cds 146279 146446 0.00 + 0 GL849746.1:subseq(0,300000)-genewise-prediction-1 // genewise output Score 22.43 bits over entire alignment Scores as bits over a synchronous coding model Warning: The bits scores is not probablistically correct for single seqs See WWW help for more info SPP00000018_1.0 446 LVHSILLWGAL LVH++L+WG+L LVHNVLVWGSL GL849746.1:su-283603 cgcagcgtgac ttaatttgggt tacttacggtt // >GL849746.1:subseq(0,300000).pep LVHNVLVWGSL // >GL849746.1:subseq(0,300000).[283603:283569].sp CTTGTACACAATGTTCTAGTCTGGGGGAGTCTT // GL849746.1:subseq(0,300000) GeneWise match 283603 283571 22.43 - . GL849746.1:subseq(0,300000)-genewise-prediction-1 GL849746.1:subseq(0,300000) GeneWise cds 283603 283571 0.00 - 0 GL849746.1:subseq(0,300000)-genewise-prediction-1 //