genewise output
Score 18.65 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000017_1.0  126 PEYVWAPAKPPEET                                    
                     P + W P  PP  T                                    
                     PSWAWGPRPPPAPT                                    
GL841643.1      7301 cttgtgcacccgca                                    
                     ccgcggcgcccccc                                    
                     ctgagccgccaccc                                    


//
>GL841643.1.pep
PSWAWGPRPPPAPT
//
>GL841643.1.[7301:7342].sp
CCCTCTTGGGCATGGGGCCCCAGGCCCCCCCCAGCCCCCACC
//
GL841643.1	GeneWise	match	7301	7342	18.65	+	.	GL841643.1-genewise-prediction-1
GL841643.1	GeneWise	cds	7301	7342	0.00	+	0	GL841643.1-genewise-prediction-1
//

genewise output
Score 110.67 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000017_1.0   55 EVKAFVTQDIPF                          HNLVMKHLPGA 
                     +VK FVTQD+P+                          HNLV+K+ PGA 
                     QVKLFVTQDVPY           Y:Y[tat]       HNLVLKYFPGA 
GL841643.1    -27347 cgactgacggctTAGTATCTT  Intron 1   CAGTcacgcattcgg 
                     atatttcaatca  <2-----[27309:26770]-2> aatttaatcgc 
                     ggatcccgttac                          ccgggacctac 


SPP00000017_1.0   79 DPELVLLGRRYEELE                       RIPLSEMTREE 
                     DPELVLLG +YEELE                       RIPL +MTREE 
                     DPELVLLGYQYEELE                       RIPLRDMTREE 
GL841643.1    -26735 gcgcgccgtctggcgGTGAGTC  Intron 2   CAGaacccgaacgg 
                     acattttgaaaaata<0-----[26690:26578]-0>gtctgatcgaa 
                     ctggcggacgtggag                       accctcgcggg 


SPP00000017_1.0  105 INALVQELGFYRKAAPDAQVPPEYVWAPAK                    
                     IN L+++LGFYRK++PDA VPPE+ +APA+                    
                     INQLLKDLGFYRKSSPDAPVPPEFQYAPAR                    
GL841643.1    -26544 aacccagcgttcatacggcgccgtctgcga                    
                     taattaatgtagacgcacctccataacccg                    
                     ctggggcgcccgaccgtccctcgcgccccg                    


//
Making a Y in phase 2 intron
>GL841643.1.pep
QVKLFVTQDVPYYHNLVLKYFPGADPELVLLGYQYEELERIPLRDMTREEINQLLKDLGF
YRKSSPDAPVPPEFQYAPAR
//
>GL841643.1.[27347:26453].sp
CAGGTGAAACTTTTCGTCACCCAGGATGTTCCATACTATCACAACCTGGTGCTGAAATAC
TTCCCTGGAGCCGACCCTGAGCTGGTCCTGCTGGGATACCAGTATGAGGAGCTAGAGAGA
ATCCCCCTCCGTGACATGACCCGGGAGGAGATCAATCAGCTGCTGAAGGACCTGGGCTTC
TACCGGAAATCCAGCCCGGATGCCCCCGTCCCTCCCGAGTTCCAGTACGCCCCCGCCAGG
//
GL841643.1	GeneWise	match	27347	26455	110.67	-	.	GL841643.1-genewise-prediction-1
GL841643.1	GeneWise	cds	27347	27310	0.00	-	0	GL841643.1-genewise-prediction-1
GL841643.1	GeneWise	intron	27309	26770	0.00	-	.	GL841643.1-genewise-prediction-1
GL841643.1	GeneWise	cds	26769	26691	0.00	-	1	GL841643.1-genewise-prediction-1
GL841643.1	GeneWise	intron	26690	26578	0.00	-	.	GL841643.1-genewise-prediction-1
GL841643.1	GeneWise	cds	26577	26455	0.00	-	0	GL841643.1-genewise-prediction-1
//