genewise output
Score 139.45 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000016_1.0    7 GQVLDSRSQSPWRLSLITDFFWGIAEFVVL                    
                     GQVLDSR++S W LS ITD+FWGIA+FV++                    
                     GQVLDSRNRSLWSLSFITDLFWGIADFVIM                    
GL841621.1:subs50000 gcgtgacactctatttaagcttgaggtgaa                    
                     gattaggagctggtcttcattggtcatttt                    
                     aataccgtgaagtaacaatctgactctgtg                    


SPP00000016_1.0   37                           FKTLLQQDVKKRRSYGNSSDSRY 
                                               FK+LLQQDVK RR Y  +SDSRY 
                                F:F[ttt]       FKSLLQQDVK-RRGYVGTSDSRY 
GL841621.1:subs50090 TTGTGAGTA  Intron 1   CAGTtaaccccgga aagtggatgtct 
                       <2-----[50092:51151]-2> tagttaaata gggatgccacga 
                                               cacgtgataa aactgtattcgc 


SPP00000016_1.0   61 DDGR                          PPGNPPRRMGRINHLRGPS 
                     DDGR                          PPGNP RRMGRINH++GPS 
                     DDGR           G:G[ggg]       PPGNPRRRMGRINHMKGPS 
GL841621.1:subs51219 gggaGGGTACGTT  Intron 2   TAGGccgacccaagcaacaagca 
                     aagg  <2-----[51233:51807]-2> ccgacgggtggtaatagcg 
                     ttaa                          tgattccagcgatcgactt 


SPP00000016_1.0   85 PPPMAGG                                           
                     PPPMAGG                                           
                     PPPMAGG                                           
GL841621.1:subs51866 cccaggg                                           
                     ccctcgg                                           
                     tttgcta                                           


//
Making a F in phase 2 intron
Making a G in phase 2 intron
>GL841621.1:subseq(2027397,300000).pep
GQVLDSRNRSLWSLSFITDLFWGIADFVIMFFKSLLQQDVKRRGYVGTSDSRYDDGRGPP
GNPRRRMGRINHMKGPSPPPMAGG
//
>GL841621.1:subseq(2027397,300000).[50000:51886].sp
GGACAAGTTTTAGACAGCCGGAATCGGTCACTATGGAGTTTATCATTCATAACAGATCTC
TTTTGGGGAATCGCTGACTTTGTGATTATGTTTTTCAAAAGCCTGCTTCAGCAAGATGTA
AAAAGAAGAGGCTATGTGGGTACATCTGATTCCCGGTACGATGATGGAAGAGGGCCTCCG
GGAAATCCTCGCCGCAGAATGGGCCGGATAAATCACATGAAAGGCCCTAGTCCTCCTCCT
ATGGCCGGTGGA
//
GL841621.1:subseq(2027397,300000)	GeneWise	match	50000	51886	139.45	+	.	GL841621.1:subseq(2027397,300000)-genewise-prediction-1
GL841621.1:subseq(2027397,300000)	GeneWise	cds	50000	50091	0.00	+	0	GL841621.1:subseq(2027397,300000)-genewise-prediction-1
GL841621.1:subseq(2027397,300000)	GeneWise	intron	50092	51151	0.00	+	.	GL841621.1:subseq(2027397,300000)-genewise-prediction-1
GL841621.1:subseq(2027397,300000)	GeneWise	cds	51152	51232	0.00	+	1	GL841621.1:subseq(2027397,300000)-genewise-prediction-1
GL841621.1:subseq(2027397,300000)	GeneWise	intron	51233	51807	0.00	+	.	GL841621.1:subseq(2027397,300000)-genewise-prediction-1
GL841621.1:subseq(2027397,300000)	GeneWise	cds	51808	51886	0.00	+	1	GL841621.1:subseq(2027397,300000)-genewise-prediction-1
//

genewise output
Score 24.00 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000016_1.0   51 SYGNSSDSRYDDGRGPPGNPPRRMGRINHLRGPSPPPMAGG         
                     S GN + +  D G GP   P    G     +GPS PP++ G         
                     SKGNENGAGGDSGPGPGVRPQEPRGWSKPRKGPSWPPVSPG         
GL841621.1:sub-96661 tagagagggggtgcgcggcccgcagtaacaagcttccgtcg         
                     cagaaagcggacgcgcgtgcaacggggacgagccgcctccg         
                     aactgtgagtctaagtacgtggggcgcgcgattggcacaga         


//
>GL841621.1:subseq(2027397,300000).pep
SKGNENGAGGDSGPGPGVRPQEPRGWSKPRKGPSWPPVSPG
//
>GL841621.1:subseq(2027397,300000).[96661:96537].sp
TCAAAAGGCAATGAGAATGGGGCAGGGGGTGACTCTGGACCAGGGCCTGGAGTCCGGCCT
CAGGAGCCGAGGGGCTGGAGCAAGCCCAGGAAAGGTCCTTCGTGGCCCCCAGTCTCACCG
GGA
//
GL841621.1:subseq(2027397,300000)	GeneWise	match	96661	96539	24.00	-	.	GL841621.1:subseq(2027397,300000)-genewise-prediction-1
GL841621.1:subseq(2027397,300000)	GeneWise	cds	96661	96539	0.00	-	0	GL841621.1:subseq(2027397,300000)-genewise-prediction-1
//