genewise output
Score 18.89 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000013_1.0   49 NLLCSSCDLL                                        
                     +L+C SCDLL                                        
                     SLICLSCDLL                                        
GL856743.1:sub145770 tcattttgct                                        
                     cttgtcgatt                                        
                     tgttattctg                                        


//
>GL856743.1:subseq(0,300000).pep
SLICLSCDLL
//
>GL856743.1:subseq(0,300000).[145770:145799].sp
TCTCTGATTTGTTTATCTTGTGACCTTTTG
//
GL856743.1:subseq(0,300000)	GeneWise	match	145770	145799	18.89	+	.	GL856743.1:subseq(0,300000)-genewise-prediction-1
GL856743.1:subseq(0,300000)	GeneWise	cds	145770	145799	0.00	+	0	GL856743.1:subseq(0,300000)-genewise-prediction-1
//

genewise output
Score 159.65 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000013_1.0    3 AMAAGPSGCLVPAFGLRLLLATVLQA                        
                     AMAAG      PAFGLRLLL ++LQA                        
                     AMAAGEQRWFPPAFGLRLLLVSLLQA                        
GL856743.1:su-119770 gaggggccttccgtgcctccgtcccgGTGAGTG  Intron 1   CAG 
                     ctccgaaggtccctgtgttttcttac<0-----[119692:11086-0> 
                     gggttggggccgtcggagggggggag                        


SPP00000013_1.0   29 VSAFGAEFSSEACRELGFSSNLLCSSCDLLGQFNLLQLDPDCRGCCQEE 
                     +SA G+E+SSEACR+LGFSSNLLCSSCDLLGQF+L QLDPDCRGCCQEE 
                     ISAQGSELSSEACRDLGFSSNLLCSSCDLLGQFSLTQLDPDCRGCCQEE 
GL856743.1:su-110864 atgcgtgtttggtagtgttaatctattgccgctataccgcgtagttcgg 
                     tccagcatccacggatgtcgattggcgattgatgtcatacagggggaaa 
                     atagagaaaaaacacgtccctgctctttttggttatggtttcaaccgaa 


SPP00000013_1.0   78 AQFETKK                       LYAGAILEVCGXKLGRFPQ 
                     AQFET+K                       LYAGAILEVCGXKLGRFPQ 
                     AQFETRK                       LYAGAILEVCGXKLGRFPQ 
GL856743.1:su-110717 gctgaaaGTAATTT  Intron 2   TAGctgggacggtgtacgctcc 
                     catacga<0-----[110696:86993-0>tacgcttatgggatggtca 
                     agtacag                       ataatttaataaagggcta 


SPP00000013_1.0  104 VQ                          CPWFRPCIKAFG          
                     VQ                          C WFRPC KA G          
                     VQ          V:V[gta]        CSWFRPCAKAVG          
GL856743.1:sub-86935 gcGGTAAGTA  Intron 3   CAGTAttttactgaggg          
                     ta <1-----[86928:76195]-1>  gcgtgcgcactg          
                     cg                          ttgcacttatta          


//
Making a V in phase 1 intron
>GL856743.1:subseq(0,300000).pep
AMAAGEQRWFPPAFGLRLLLVSLLQAISAQGSELSSEACRDLGFSSNLLCSSCDLLGQFS
LTQLDPDCRGCCQEEAQFETRKLYAGAILEVCGXKLGRFPQVQVCSWFRPCAKAVG
//
>GL856743.1:subseq(0,300000).[119770:76155].sp
GCGATGGCGGCTGGTGAGCAGCGGTGGTTCCCCCCGGCTTTCGGGCTGCGATTGCTGCTG
GTGTCGCTGCTGCAAGCGATATCTGCACAGGGATCGGAATTATCATCAGAAGCATGCAGA
GACTTGGGTTTCTCCAGCAATTTGCTCTGTAGCTCTTGTGATCTTCTTGGGCAGTTTAGT
TTAACTCAGCTGGATCCTGATTGCAGAGGATGCTGCCAGGAAGAAGCACAGTTTGAAACC
AGAAAGCTATATGCAGGAGCTATTCTTGAAGTATGTGGATGAAAACTGGGGCGGTTCCCT
CAAGTCCAGGTATGTTCTTGGTTCAGACCCTGTGCTAAAGCTGTTGGA
//
GL856743.1:subseq(0,300000)	GeneWise	match	119770	76157	159.65	-	.	GL856743.1:subseq(0,300000)-genewise-prediction-1
GL856743.1:subseq(0,300000)	GeneWise	cds	119770	119693	0.00	-	0	GL856743.1:subseq(0,300000)-genewise-prediction-1
GL856743.1:subseq(0,300000)	GeneWise	intron	119692	110865	0.00	-	.	GL856743.1:subseq(0,300000)-genewise-prediction-1
GL856743.1:subseq(0,300000)	GeneWise	cds	110864	110697	0.00	-	0	GL856743.1:subseq(0,300000)-genewise-prediction-1
GL856743.1:subseq(0,300000)	GeneWise	intron	110696	86993	0.00	-	.	GL856743.1:subseq(0,300000)-genewise-prediction-1
GL856743.1:subseq(0,300000)	GeneWise	cds	86992	86929	0.00	-	0	GL856743.1:subseq(0,300000)-genewise-prediction-1
GL856743.1:subseq(0,300000)	GeneWise	intron	86928	76195	0.00	-	.	GL856743.1:subseq(0,300000)-genewise-prediction-1
GL856743.1:subseq(0,300000)	GeneWise	cds	76194	76157	0.00	-	2	GL856743.1:subseq(0,300000)-genewise-prediction-1
//