genewise output
Score 19.56 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000012_1.0   11 LLLLHSLFPVPRMGNSASNIVSPQEALP                      
                     L L H  F +P M N+  +  SP   LP                      
                     LFLYHKSFFLPFMANNLCHSTSPFPILP                      
GL834715.1:sub164208 ctctcaatttctagaattctatctcacc                      
                     tttaaagtttcttcaatgacccctcttc                      
                     tccctactcgttgattactcctctctca                      


//
>GL834715.1:subseq(1069115,300000).pep
LFLYHKSFFLPFMANNLCHSTSPFPILP
//
>GL834715.1:subseq(1069115,300000).[164208:164291].sp
CTTTTCCTCTACCATAAAAGCTTTTTCTTGCCTTTTATGGCAAATAATTTATGCCATTCC
ACCTCTCCCTTTCCCATTCTCCCA
//
GL834715.1:subseq(1069115,300000)	GeneWise	match	164208	164291	19.56	+	.	GL834715.1:subseq(1069115,300000)-genewise-prediction-1
GL834715.1:subseq(1069115,300000)	GeneWise	cds	164208	164291	0.00	+	0	GL834715.1:subseq(1069115,300000)-genewise-prediction-1
//

genewise output
Score 258.09 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000012_1.0   48 AKHHVNGNRTVEPFPEGTQMAVF                           
                     A+HHVNGN+TVEPFPEGTQMA+F                           
                     ARHHVNGNKTVEPFPEGTQMALF          G:G[gga]         
GL834715.1:su-250000 gaccgagaaaggctcggacagctGGTAAGAT  Intron 1   CAGGA 
                     cgaatagaactactcagcatctt <1-----[249930:21453-1>   
                     cattctatgttatcagaaggtgt                           


SPP00000012_1.0   72 MGCFWGAERKFWVLKGVYSTQVGFAGGYTSNPTYKEVCS           
                     MGCFWGAERKFW LKGVYSTQVG+AGGYTSNPTYKEVCS           
                     MGCFWGAERKFWDLKGVYSTQVGYAGGYTSNPTYKEVCS           
GL834715.1:su-214533 agtttgggcattgtaggttacggtgggtatacataggtt           
                     tggtggcagatgatagtaccatgacggaccaccaaatgc           
                     ggttgaaatatgcggaatttatcttacctacattaacca           


SPP00000012_1.0  111                           KTGHAEVVRVVYQPEHMSFEELL 
                                               KTGH E+VRVVYQPE++SFE+LL 
                               E:E[gag]        KTGHVEIVRVVYQPEYISFEDLL 
GL834715.1:su-214416 GGTAGGAA  Intron 2   AAGAGaagcggagcggtccgtaatggcc 
                      <1-----[214415:13048-1>  acgatattgttaacaatgtaatt 
                                               atctaatcatgcgaaccttgtgc 


SPP00000012_1.0  135 KVFWENHDPTQ                          MRQGNDHGTQYR 
                     KVFWENHDPTQ                          MRQGND GTQYR 
                     KVFWENHDPTQ          G:G[gga]        MRQGNDFGTQYR 
GL834715.1:su-130410 agttgacgcacGGTAGAGT  Intron 3   TAGGAaccgagtgactc 
                     attgaaaacca <1-----[130376:10731-1>  tgagaatgcaag 
                     gccggttcgaa                          gtattctccgct 


SPP00000012_1.0  159 SAIYPTSAKQMEAALSSKENYQKV                          
                     SAI+PT+ +Q EAAL SKE YQKV                          
                     SAIFPTTPEQAEAALKSKEVYQKV                          
GL834715.1:su-107278 tgatcaacgcggggcataggtcag                          
                     ccttccccaacacctacaataaat                          
                     ttccactaagaaattgtaatcgga                          


//
Making a G in phase 1 intron
Making a E in phase 1 intron
Making a G in phase 1 intron
>GL834715.1:subseq(1069115,300000).pep
ARHHVNGNKTVEPFPEGTQMALFGMGCFWGAERKFWDLKGVYSTQVGYAGGYTSNPTYKE
VCSEKTGHVEIVRVVYQPEYISFEDLLKVFWENHDPTQGMRQGNDFGTQYRSAIFPTTPE
QAEAALKSKEVYQKV
//
>GL834715.1:subseq(1069115,300000).[250000:107205].sp
GCCAGACATCATGTCAATGGAAATAAGACTGTTGAACCTTTCCCAGAGGGAACACAGATG
GCTCTGTTTGGAATGGGGTGTTTTTGGGGAGCAGAACGTAAATTTTGGGACTTGAAGGGA
GTATATTCTACTCAAGTTGGCTATGCTGGAGGCTACACTTCAAACCCAACTTATAAAGAA
GTCTGCTCAGAGAAAACTGGCCATGTAGAAATTGTCCGAGTTGTGTACCAGCCAGAATAC
ATCAGTTTTGAGGATCTGCTCAAGGTCTTCTGGGAGAATCATGACCCGACACAAGGAATG
CGTCAAGGTAATGACTTTGGCACCCAGTACCGTTCTGCTATCTTCCCAACCACTCCAGAA
CAGGCAGAAGCAGCTCTTAAGTCTAAAGAAGTTTACCAGAAGGTA
//
GL834715.1:subseq(1069115,300000)	GeneWise	match	250000	107207	258.09	-	.	GL834715.1:subseq(1069115,300000)-genewise-prediction-1
GL834715.1:subseq(1069115,300000)	GeneWise	cds	250000	249931	0.00	-	0	GL834715.1:subseq(1069115,300000)-genewise-prediction-1
GL834715.1:subseq(1069115,300000)	GeneWise	intron	249930	214536	0.00	-	.	GL834715.1:subseq(1069115,300000)-genewise-prediction-1
GL834715.1:subseq(1069115,300000)	GeneWise	cds	214535	214416	0.00	-	2	GL834715.1:subseq(1069115,300000)-genewise-prediction-1
GL834715.1:subseq(1069115,300000)	GeneWise	intron	214415	130482	0.00	-	.	GL834715.1:subseq(1069115,300000)-genewise-prediction-1
GL834715.1:subseq(1069115,300000)	GeneWise	cds	130481	130377	0.00	-	2	GL834715.1:subseq(1069115,300000)-genewise-prediction-1
GL834715.1:subseq(1069115,300000)	GeneWise	intron	130376	107317	0.00	-	.	GL834715.1:subseq(1069115,300000)-genewise-prediction-1
GL834715.1:subseq(1069115,300000)	GeneWise	cds	107316	107207	0.00	-	2	GL834715.1:subseq(1069115,300000)-genewise-prediction-1
//