genewise output
Score 18.86 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000007_1.0   56 LDKYRGFVCIVTNV                                    
                     LD Y G +CIV N+                                    
                     LDFYCGNICIVFNI                                    
GL841423.1:subs26155 tgtttgaatagtaa                                    
                     tataggatgtttat                                    
                     attttatacatcct                                    


//
>GL841423.1:subseq(473699,300000).pep
LDFYCGNICIVFNI
//
>GL841423.1:subseq(473699,300000).[26155:26196].sp
TTAGATTTTTATTGTGGAAATATATGCATAGTTTTCAACATT
//
GL841423.1:subseq(473699,300000)	GeneWise	match	26155	26196	18.86	+	.	GL841423.1:subseq(473699,300000)-genewise-prediction-1
GL841423.1:subseq(473699,300000)	GeneWise	cds	26155	26196	0.00	+	0	GL841423.1:subseq(473699,300000)-genewise-prediction-1
//

genewise output
Score 296.82 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000007_1.0   22 PGLAGTMCASRDDWRCARSMHEFSAKDIDGHMVNLDKY            
                     P L   +CASRDDWRCARSMH+F AKDIDG MV+LDKY            
                     PPLFVPQCASRDDWRCARSMHDFCAKDIDGRMVSLDKY            
GL841423.1:su-250021 ccctgcctgtcggtatgatacgttgagaggcagtcgat            
                     cctttcagccgaagggcgctaatgcaataggttctaaa            
                     ctctcagctcgccgatcgagctcttgctttcggcgtgc            


SPP00000007_1.0   60                           GFVCIVTNVASQXGKTEVNYTQL 
                                               G VCI+TNVASQXGKT+VNYTQL 
                                R:R[agg]       GCVCIITNVASQXGKTDVNYTQL 
GL841423.1:su-249907 AGGTGAGGA  Intron 1   CAGGgtgtaaaaggtctgaaggatacc 
                       <2-----[249905:24970-2> ggtgttcatccaggacataacat 
                                               ctccccctacaaatgacacctgt 


SPP00000007_1.0   84 VDLHARYAECGLRILAFPCNQFGKQ                       E 
                     VDLHARYAE GLRILAFPCNQFG+Q                       E 
                     VDLHARYAELGLRILAFPCNQFGRQ                       E 
GL841423.1:su-249633 ggccgatggcgtcatgtctactgacGTAGGTG  Intron 2   CAGg 
                     tatacgacatgtgttctcgaatgga<0-----[249558:24935-0>a 
                     ccgccattgttagtatccccgtggg                       g 


SPP00000007_1.0  110 PGSNEEIKEFAAGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILG 
                     PGSN EI+EF AGYNVKFD++SKICVNGDDAHPLWKWMKIQP+GKGILG 
                     PGSNAEIREFTAGYNVKFDVYSKICVNGDDAHPLWKWMKIQPRGKGILG 
GL841423.1:su-249349 cgaaggacgtaggtagatggtaaatgaggggccctataaaccagagatg 
                     cggacatgatccgaatatatagatgtagaacactgagtatacggagttg 
                     agttgataacttcctcgttaccaatctctttccgggggacacaggccgc 


SPP00000007_1.0  159                           AIKWNFTK                
                                               AIKWNFTK                
                                N:N[aat]       AIKWNFTK                
GL841423.1:su-249202 AAGTGAGTG  Intron 3   CAGTgaatataa                
                       <2-----[249200:24901-2> ctagatca                
                                               aaggcccg                


SPP00000007_1.0  168                        FLIDKNGCVVKRYGPMEEPLV      
                                            FLIDK+GCVVKRYGPMEEPLV      
                                            FLIDKDGCVVKRYGPMEEPLV      
GL841423.1:su-248985 GTGAGTC  Intron 4   CAGtcagaggtggactgcaggccg      
                     <0-----[248985:24794-0>tttaaaggttagagctaactt      
                                            cttcatctgggacttgagcga      


//
Making a R in phase 2 intron
Making a N in phase 2 intron
>GL841423.1:subseq(473699,300000).pep
PPLFVPQCASRDDWRCARSMHDFCAKDIDGRMVSLDKYRGCVCIITNVASQXGKTDVNYT
QLVDLHARYAELGLRILAFPCNQFGRQEPGSNAEIREFTAGYNVKFDVYSKICVNGDDAH
PLWKWMKIQPRGKGILGNAIKWNFTKFLIDKDGCVVKRYGPMEEPLV
//
>GL841423.1:subseq(473699,300000).[250021:247879].sp
CCCCCTCTCTTTGTCCCACAGTGCGCTTCCCGGGACGACTGGAGATGTGCCAGGTCAATG
CACGATTTCTGTGCTAAGGACATTGATGGTCGCATGGTGTCCCTGGATAAGTACAGGGGC
TGTGTCTGCATCATCACCAATGTAGCCTCACAATGAGGTAAGACAGACGTAAACTACACT
CAGCTTGTCGACCTGCACGCCAGATATGCTGAGCTTGGTTTACGGATTTTAGCTTTCCCC
TGCAACCAGTTTGGGAGGCAGGAGCCAGGGAGTAATGCGGAAATTCGAGAATTCACTGCT
GGCTACAATGTCAAGTTTGATGTATACAGCAAAATATGTGTCAATGGCGATGATGCTCAC
CCCCTGTGGAAGTGGATGAAAATCCAACCCAGAGGGAAGGGCATCTTGGGCAATGCAATA
AAGTGGAACTTCACCAAGTTCCTTATTGACAAAGATGGCTGTGTGGTGAAGCGATACGGT
CCTATGGAAGAGCCCCTGGTA
//
GL841423.1:subseq(473699,300000)	GeneWise	match	250021	247881	296.82	-	.	GL841423.1:subseq(473699,300000)-genewise-prediction-1
GL841423.1:subseq(473699,300000)	GeneWise	cds	250021	249906	0.00	-	0	GL841423.1:subseq(473699,300000)-genewise-prediction-1
GL841423.1:subseq(473699,300000)	GeneWise	intron	249905	249704	0.00	-	.	GL841423.1:subseq(473699,300000)-genewise-prediction-1
GL841423.1:subseq(473699,300000)	GeneWise	cds	249703	249559	0.00	-	1	GL841423.1:subseq(473699,300000)-genewise-prediction-1
GL841423.1:subseq(473699,300000)	GeneWise	intron	249558	249353	0.00	-	.	GL841423.1:subseq(473699,300000)-genewise-prediction-1
GL841423.1:subseq(473699,300000)	GeneWise	cds	249352	249201	0.00	-	0	GL841423.1:subseq(473699,300000)-genewise-prediction-1
GL841423.1:subseq(473699,300000)	GeneWise	intron	249200	249011	0.00	-	.	GL841423.1:subseq(473699,300000)-genewise-prediction-1
GL841423.1:subseq(473699,300000)	GeneWise	cds	249010	248986	0.00	-	1	GL841423.1:subseq(473699,300000)-genewise-prediction-1
GL841423.1:subseq(473699,300000)	GeneWise	intron	248985	247944	0.00	-	.	GL841423.1:subseq(473699,300000)-genewise-prediction-1
GL841423.1:subseq(473699,300000)	GeneWise	cds	247943	247881	0.00	-	0	GL841423.1:subseq(473699,300000)-genewise-prediction-1
//