genewise output
Score 16.38 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000006_1.0   97 LGFP--CNQFGKQEPG                                  
                     + FP  C  FGK +PG                                  
                     MSFPILCFTFGKNQPG                                  
GL840403.1      7674 aatcacttatgaaccg                                  
                     tgtcttgtctgaaacg                                  
                     gctcttccatggcaag                                  


//
>GL840403.1.pep
MSFPILCFTFGKNQPG
//
>GL840403.1.[7674:7721].sp
ATGAGCTTTCCCATTCTTTGCTTCACATTTGGGAAGAACCAACCAGGG
//
GL840403.1	GeneWise	match	7674	7721	17.38	+	.	GL840403.1-genewise-prediction-1
GL840403.1	GeneWise	cds	7674	7721	0.00	+	0	GL840403.1-genewise-prediction-1
//

genewise output
Score 337.69 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000006_1.0    5 LQASCLLSLLLAGFVSQSRGQEKSK                       M 
                     LQ S LL L+L+ FV  +RGQEK K                         
                     LQVSWLLPLVLSAFVQPTRGQEKMK                       T 
GL840403.1    -19418 ccgttccccgctgtgccacgcgaaaGTAAGGC  Intron 1   CAGa 
                     tatcgttctttccttaccggaaata<0-----[19343:12868]-0>c 
                     cgccgtcgcggccccgctgcggagg                       g 


SPP00000006_1.0   31 DCHGGISGTIYEYGALTIDGEEYIPFKQYAGKYVLFVNVASYXGLTGQY 
                     DC+ GI+G IY+YGALTID +EYIPFKQYAGKYVLFVNVA+YXGLT QY 
                     DCYQGITGNIYDYGALTIDTDEYIPFKQYAGKYVLFVNVATYXGLTVQY 
GL840403.1    -12864 gttcgaagaatgtggcaagaggtactactggatgctgaggattgcagct 
                     agaagtcgataaagctctacaaatctaaacgaattttatccaggtctaa 
                     cccagtgtccttttcccttttaccacgatacatcccactcccacggcgc 


SPP00000006_1.0   80 I                          LNALQEELAPFGLVILGFPCNQ 
                     +                          LNALQE+L    LVILGFPCNQ 
                     L          E:E[gaa]        LNALQEDLKSQNLVILGFPCNQ 
GL840403.1    -12717 cGGTAAGCC  Intron 2   CAGAAtagccggtatcacgacgtctac 
                     t <1-----[12713:11876]-1>  tactaaatacaattttgtcgaa 
                     t                          gtaaggtggggcttcgacacca 


SPP00000006_1.0  104 FGKQEPGENSEILPTL                          YVRPGGG 
                     FGKQEPG+NSE+LP L                          +VRPGGG 
                     FGKQEPGQNSEVLPAL           K:K[aag]       HVRPGGG 
GL840403.1    -11807 tgacgcgcatggccgcAAGTGAGTT  Intron 3   TAGGcgccggg 
                     tgaaacgaacattcct  <2-----[11757:11105]-2> atgcggg 
                     taaaaaaataacctcc                          tacatgc 


SPP00000006_1.0  128 FVPNFQLFEKGDVNGEKEQKFYTFLK                        
                     FVPNFQLFEKGDVNGEKEQK YTFLK                        
                     FVPNFQLFEKGDVNGEKEQKVYTFLK                        
GL840403.1    -11082 tgcatcctgagggaggagcagtatcaGTGAGTG  Intron 4   CAG 
                     ttcatattaagatagaaaaatactta<0-----[11004: 9425]-0> 
                     cgctcgatgagtgtagaagattccgg                        


SPP00000006_1.0  154 NSCPPTSELLGTSDRLFWEPMKVHDIRWNFEKFLVGPDGIPIMRWHHRT 
                     NSCPP SE++G   RLFWEPMKVHDIRWNFEKFLVGPDG+PIMRW+HR  
                     NSCPPPSEVIGQPSRLFWEPMKVHDIRWNFEKFLVGPDGVPIMRWYHRA 
GL840403.1     -9424 attccctggagccaccttgcaagcgactatgatcggcgggcaacttccg 
                     acgccccattgacggttgactataatggataatttgcagtcttggaagc 
                     tacatctacacacccccgacggctcccgttggcgggattcccgcgccgc 


SPP00000006_1.0  203 TVSNVKMDILSYMRRQAAL                               
                      VS VK DI+ Y+++  +L                               
                     PVSLVKSDIIDYLQKHGSL                               
GL840403.1     -9277 cgacgatgaagtccacgac                               
                     ctgttacattaataaaggt                               
                     accgcgaccactggatccc                               


//
Making a E in phase 1 intron
Making a K in phase 2 intron
>GL840403.1.pep
LQVSWLLPLVLSAFVQPTRGQEKMKTDCYQGITGNIYDYGALTIDTDEYIPFKQYAGKYV
LFVNVATYXGLTVQYLELNALQEDLKSQNLVILGFPCNQFGKQEPGQNSEVLPALKHVRP
GGGFVPNFQLFEKGDVNGEKEQKVYTFLKNSCPPPSEVIGQPSRLFWEPMKVHDIRWNFE
KFLVGPDGVPIMRWYHRAPVSLVKSDIIDYLQKHGSL
//
>GL840403.1.[19418:9219].sp
CTCCAGGTCTCCTGGCTTCTCCCGCTCGTGCTGTCCGCCTTCGTCCAGCCCACTCGGGGC
CAGGAGAAAATGAAGACGGACTGCTACCAAGGGATTACGGGTAACATCTATGATTATGGT
GCCCTCACCATTGATACTGATGAATACATCCCATTCAAGCAATATGCAGGCAAATATGTC
CTCTTCGTAAACGTTGCCACCTACTGAGGCCTGACGGTCCAGTACCTTGAATTGAATGCA
CTACAGGAGGATTTGAAGTCGCAGAACCTTGTTATCCTGGGATTCCCATGCAACCAATTT
GGAAAACAAGAACCAGGACAAAATTCAGAAGTCCTCCCTGCCCTCAAGCATGTACGCCCA
GGTGGGGGCTTCGTGCCCAATTTCCAGCTATTTGAGAAAGGGGATGTGAATGGAGAGAAA
GAACAGAAAGTTTATACCTTCCTGAAGAATTCATGCCCACCTCCCTCTGAAGTCATAGGC
CAACCCAGCCGCCTCTTCTGGGAACCCATGAAGGTCCATGACATCCGCTGGAATTTTGAG
AAGTTCCTGGTGGGGCCAGATGGTGTCCCCATCATGCGCTGGTACCACCGGGCCCCAGTC
AGCCTGGTCAAGTCAGACATCATAGACTATCTGCAGAAACATGGCAGCCTC
//
GL840403.1	GeneWise	match	19418	9221	337.69	-	.	GL840403.1-genewise-prediction-1
GL840403.1	GeneWise	cds	19418	19344	0.00	-	0	GL840403.1-genewise-prediction-1
GL840403.1	GeneWise	intron	19343	12868	0.00	-	.	GL840403.1-genewise-prediction-1
GL840403.1	GeneWise	cds	12867	12714	0.00	-	0	GL840403.1-genewise-prediction-1
GL840403.1	GeneWise	intron	12713	11876	0.00	-	.	GL840403.1-genewise-prediction-1
GL840403.1	GeneWise	cds	11875	11758	0.00	-	2	GL840403.1-genewise-prediction-1
GL840403.1	GeneWise	intron	11757	11105	0.00	-	.	GL840403.1-genewise-prediction-1
GL840403.1	GeneWise	cds	11104	11005	0.00	-	1	GL840403.1-genewise-prediction-1
GL840403.1	GeneWise	intron	11004	9425	0.00	-	.	GL840403.1-genewise-prediction-1
GL840403.1	GeneWise	cds	9424	9221	0.00	-	0	GL840403.1-genewise-prediction-1
//