genewise output Score 328.97 bits over entire alignment Scores as bits over a synchronous coding model Warning: The bits scores is not probablistically correct for single seqs See WWW help for more info SPP00000001_1.0 8 LWLKRLWVLLEVAVHVVVGKVLLILFPDRVKRNILAMGEKTGMTRNPHF LW +RLWVLL+VA HV VGKV ILFP+R+KRN+L+ + + +NP F LWGRRLWVLLQVAWHVAVGKVQKILFPERMKRNLLS--QRININQNPAF GL857025.1:subs49925 ctgacctgtccggtcggggagcaattcgaaaaacca caaaaacacgt tggggtgtttatcgatctgataatttcagtagattg agtataaacct cgcggcgcggggcgttaagggggcgcaaggggtcgc gatcttgctat SPP00000001_1.0 57 SHDNWIPTFFSTQYFWFVLKVRWQRLEDTTELGGLAPNCPVVRLSGQRC + +W PTFFS QYF+FVLKVRWQ LED GGLAPN PVV LSG+ EYKDWGPTFFSIQYFFFVLKVRWQHLEDQALQGGLAPNSPVVTLSGESR GL857025.1:subs50066 gtagtgcattaacttttgcagctcccggcgccggcgcatcggacaggac aaaaggccttgtaatttttatggaataaactaggtccaccttctggagg gtgcgcgaccccgccctcggcaggcggcggaggagaccttgccccggct SPP00000001_1.0 106 NIWEFMQ NRPLVLNFGSCTXPSF IW+FM NRPLVLNFGSCTXPSF RIWDFMN G:D[gac] NRPLVLNFGSCTXPSF GL857025.1:subs50213 catgtaaGGTCAGTG Intron 1 CAGACaactgcatgatatctt gtgatta <1-----[50235:52823]-1> agctttatgggcgcct ccgccgt cgtgggttacccacat SPP00000001_1.0 130 MFKFDQFKRLIEDFSSIADFLVIYIEEAHAS MFKF QF++LIEDFSSIADFL+IYIEEAHA+ MFKFGQFQKLIEDFSSIADFLIIYIEEAHAA GL857025.1:subs52874 atatgctcacaggtataggtcaatagggcgg ttatgataattaatgctcattttataacacc gcatcgcgactacccaaatcgccctggttta SPP00000001_1.0 161 GWAFKNNMDIRNHQNLQDRLQAA GWAF NN++IR H+ L++R++A+ D:D[gac] GWAFANNIEIRQHRTLRERMEAS GL857025.1:subs52967 GGTACAAA Intron 2 CAGACgtgtgaaagaacccaccgcaggt <1-----[52968:59549]-1> ggctcaatatgaagctgagtacc cgttactcgcagtccttgcgatc SPP00000001_1.0 185 HLLLARSPQCPVVVDTMQNQSSQLYAALPERLYIIQEGRILYK L + P CPVV+DTM N +S+ YAALPER Y++ EGRIL+K WRLRDKKPMCPVVLDTMDNLTSRSYAALPERFYVLLEGRILFK GL857025.1:subs59621 tccagaacatcggtgaagacaaaatggccgcttgccggaacta ggtgaaactgctttactaatcgggacctcagtatttaggttta ggggcggcgtcttaccgccgccgctcccaacctttgacgcccg SPP00000001_1.0 228 GKSGPWNYNPEEVRAVLEKL G GPW+Y+PEEVR VLEKL GGPGPWHYDPEEVRKVLEKL GL857025.1:subs59750 GTACGAA Intron 3 CAGggcgctctgcgggcagcgac <0-----[59750:64787]-0>ggcgcgaaacaatgattaat tcacggtctgagccgcgaga // Making a D in phase 1 intron Making a D in phase 1 intron >GL857025.1:subseq(257401,300000).pep LWGRRLWVLLQVAWHVAVGKVQKILFPERMKRNLLSQRININQNPAFEYKDWGPTFFSIQ YFFFVLKVRWQHLEDQALQGGLAPNSPVVTLSGESRRIWDFMNDNRPLVLNFGSCTXPSF MFKFGQFQKLIEDFSSIADFLIIYIEEAHAADGWAFANNIEIRQHRTLRERMEASWRLRD KKPMCPVVLDTMDNLTSRSYAALPERFYVLLEGRILFKGGPGPWHYDPEEVRKVLEKL // >GL857025.1:subseq(257401,300000).[49925:64847].sp CTCTGGGGCAGGCGGCTCTGGGTCTTGCTGCAGGTGGCCTGGCATGTTGCAGTAGGGAAG GTGCAGAAGATCTTGTTCCCAGAAAGGATGAAGAGGAATCTCCTGAGCCAGAGAATTAAC ATTAATCAGAACCCTGCATTTGAGTATAAGGACTGGGGCCCGACATTCTTCAGCATCCAG TACTTCTTCTTTGTCCTGAAGGTCCGATGGCAGCACCTGGAGGACCAGGCGCTACAGGGG GGACTGGCACCCAACTCTCCTGTGGTCACCCTCAGCGGGGAGAGCCGTCGCATCTGGGAC TTCATGAATGACAACAGGCCTTTGGTGCTGAATTTTGGAAGCTGCACCTGACCCTCATTT ATGTTCAAATTTGGCCAGTTCCAGAAACTCATTGAAGACTTCAGCTCAATAGCAGATTTC CTGATCATCTACATTGAGGAGGCTCATGCTGCAGACGGCTGGGCTTTTGCAAACAATATC GAGATCAGACAGCATCGCACCCTTCGTGAGCGCATGGAAGCTTCCTGGCGGCTGAGGGAC AAGAAGCCCATGTGTCCCGTTGTTTTAGACACCATGGACAACCTGACCAGCAGGAGCTAT GCCGCCCTCCCAGAACGCTTCTATGTTCTTCTGGAAGGCAGGATCCTCTTCAAGGGTGGC CCAGGCCCGTGGCATTACGATCCGGAAGAGGTCCGCAAGGTCCTGGAAAAGCTA // GL857025.1:subseq(257401,300000) GeneWise match 49925 64847 329.96 + . GL857025.1:subseq(257401,300000)-genewise-prediction-1 GL857025.1:subseq(257401,300000) GeneWise cds 49925 50234 0.00 + 0 GL857025.1:subseq(257401,300000)-genewise-prediction-1 GL857025.1:subseq(257401,300000) GeneWise intron 50235 52823 0.00 + . GL857025.1:subseq(257401,300000)-genewise-prediction-1 GL857025.1:subseq(257401,300000) GeneWise cds 52824 52967 0.00 + 2 GL857025.1:subseq(257401,300000)-genewise-prediction-1 GL857025.1:subseq(257401,300000) GeneWise intron 52968 59549 0.00 + . GL857025.1:subseq(257401,300000)-genewise-prediction-1 GL857025.1:subseq(257401,300000) GeneWise cds 59550 59749 0.00 + 2 GL857025.1:subseq(257401,300000)-genewise-prediction-1 GL857025.1:subseq(257401,300000) GeneWise intron 59750 64787 0.00 + . GL857025.1:subseq(257401,300000)-genewise-prediction-1 GL857025.1:subseq(257401,300000) GeneWise cds 64788 64847 0.00 + 0 GL857025.1:subseq(257401,300000)-genewise-prediction-1 // genewise output Score 21.63 bits over entire alignment Scores as bits over a synchronous coding model Warning: The bits scores is not probablistically correct for single seqs See WWW help for more info SPP00000001_1.0 7 GLWLKRLWVLLE G+W K+ WV LE GVWTKKQWVALE GL857025.1:su-275160 ggtaaactggtg gtgcaaagtcta ctgtgagggtgg // >GL857025.1:subseq(257401,300000).pep GVWTKKQWVALE // >GL857025.1:subseq(257401,300000).[275160:275123].sp GGCGTTTGGACTAAGAAACAGTGGGTGGCTTTGGAG // GL857025.1:subseq(257401,300000) GeneWise match 275160 275125 21.63 - . GL857025.1:subseq(257401,300000)-genewise-prediction-1 GL857025.1:subseq(257401,300000) GeneWise cds 275160 275125 0.00 - 0 GL857025.1:subseq(257401,300000)-genewise-prediction-1 //