genewise output Score 20.76 bits over entire alignment Scores as bits over a synchronous coding model Warning: The bits scores is not probablistically correct for single seqs See WWW help for more info gi|116242735|sp 324 HIKCRSAKVGWLQ H+ CR K GWL+ HLHCRQDKDGWLE GL834457.1:sub184779 ctctccgaggtcg ataggaaaaggta tgcctacattgta // >GL834457.1:subseq(625597,300000).pep HLHCRQDKDGWLE // >GL834457.1:subseq(625597,300000).[184779:184817].sp CATTTGCACTGCCGTCAAGACAAAGATGGTTGGCTTGAA // GL834457.1:subseq(625597,300000) GeneWise match 184779 184817 20.76 + . GL834457.1:subseq(625597,300000)-genewise-prediction-1 GL834457.1:subseq(625597,300000) GeneWise cds 184779 184817 0.00 + 0 GL834457.1:subseq(625597,300000)-genewise-prediction-1 // genewise output Score 347.05 bits over entire alignment Scores as bits over a synchronous coding model Warning: The bits scores is not probablistically correct for single seqs See WWW help for more info gi|116242735|sp 1 MKTAENIRGTGSDGPRKRGLCVLCGLPAAGKSTFARALAHRLQQEQGWA MK E GS+ + G CVLCGLPA+GKST++R L+ +L+++QGW MKRGEPPGDAGSERQIRLGCCVLCGLPASGKSTLSRFLSEQLRRKQGWD GL834457.1:su-250000 aaaggccggggagacactgttgctgccgtgatactctcagccacacgtg taggaccgacggagatgtgggttggtcccgacctcgttgaatggaagga gggaaccgccatgggtcgacctcccggcgcactctcttcgggggggcgc gi|116242735|sp 50 IGVVAYDDVMPDAFLAGARARPA PSQ + VV YDDV+P+A+LAG A+ PSQ VAVVTYDDVIPEALLAGENAQVL PSQ GL834457.1:su-249853 ggggatgggacggccgggagcgcGTTTGTT Intron 1 TAGctc tcttcaaattcacttcgaacatt<0-----[249784:24886-0>cca accagctcccaagccgcgctggg acg gi|116242735|sp 76 WKLLRQELLKYLEYFLMAVINGCQMSVPPNRTEAMWEDFITCLKDQDLI WK R ELL YLE+FLMA++NGC++S P RTE MWE F+ CLK+Q LI WKSFRHELLTYLEHFLMAIVNGCKLSAPALRTEVMWESFVHCLKNQSLI GL834457.1:su-248851 tattccgctatcgcttagagagtattgcgtaaggatgatgcttaacaca gactgaattcataatttcttaggatcccctgcattgagttagtaaagtt gaacatatgactatcggccttacaatcacggcacggattcctgatattt gi|116242735|sp 125 FSAAFEAQSCYLLTKTAVSRPLFLVLDDNFYYQSMRYEVYQLARK +++ Y LT A S+P +L+LDDNFYYQSMRYEVYQLARK IASGTGKTQGYSLTHAAPSQPFYLILDDNFYYQSMRYEVYQLARK GL834457.1:su-248704 agtgagaacgtatacggctccttcatggatttcaaatggtccgaa tccgcgacagagtcaccccactatttaaataaagtgaataatcga atcaaagtgtctactatggatctacgtctttcgcgataccagtaa gi|116242735|sp 170 SLGFCQLFLDCPLETCLQRNGQR S GFCQLFLDCP+E+CL+RN QR Y:Y[tat] SSGFCQLFLDCPIESCLERNRQR GL834457.1:su-248569 TGTAATTT Intron 2 TAGATttgttctttgtcagttcgaacca <1-----[248568:24809-1> ccgtgatttagctacgtagagag cactcaatattatgctaagtgga gi|116242735|sp 194 PQALPPETIHLMGRKLEKPNPEKNAWEHNSLTIPSPACASEA + +P +TI LM RK+E PN +KNAWEHNSLT+ S S+ SKPVPDDTIQLMARKIESPNIQKNAWEHNSLTVRSTGPCSDD GL834457.1:su-248019 aacgcggaaccagaaagtcaacaagtgcaacagaaagcttgg gactcaactattcgataccataaacgaaagtctggcgcgcaa taaattccagggaagaatattgatagaccccttgtaattatc gi|116242735|sp 236 LEVTDLLLTALENPVKYAEDNME +EV DLL+TAL+NP++Y E+N+E S:N[aac] VEVIDLLITALKNPIRYFEENVE GL834457.1:su-247893 AAGTATGTT Intron 3 CAGCgggagtcaagtaacacttggagg <2-----[247891:24372-2> tattatttcctaactgataaata aagttagtttgataaattaataa gi|116242735|sp 260 QK DTDRIICSTNILHKTDQTLRRIVS QK +TDRIICSTN LH+ DQ RRI+S QK ETDRIICSTNTLHQADQQFRRIIS GL834457.1:su-243651 caGTAATTC Intron 4 TAGgagcaattaaacccggcctaaaat aa<0-----[243645:24308-0>acagttgccactaacaaatggttc ag attatttatttttattgacaatct gi|116242735|sp 286 QTMKEAKG QTMK+AKG QTMKKAKG GL834457.1:su-243007 caaaagag actaacag gaggacat // Making a Y in phase 1 intron Making a N in phase 2 intron >GL834457.1:subseq(625597,300000).pep MKRGEPPGDAGSERQIRLGCCVLCGLPASGKSTLSRFLSEQLRRKQGWDVAVVTYDDVIP EALLAGENAQVLPSQWKSFRHELLTYLEHFLMAIVNGCKLSAPALRTEVMWESFVHCLKN QSLIIASGTGKTQGYSLTHAAPSQPFYLILDDNFYYQSMRYEVYQLARKYSSGFCQLFLD CPIESCLERNRQRSKPVPDDTIQLMARKIESPNIQKNAWEHNSLTVRSTGPCSDDNVEVI DLLITALKNPIRYFEENVEQKETDRIICSTNTLHQADQQFRRIISQTMKKAKG // >GL834457.1:subseq(625597,300000).[250000:242982].sp ATGAAGAGGGGAGAACCCCCCGGGGACGCCGGAAGTGAGAGGCAGATTCGCTTGGGATGC TGCGTTCTCTGCGGCCTGCCGGCCTCGGGCAAATCCACTCTCTCTCGCTTTCTTAGCGAG CAGCTGAGGCGGAAGCAGGGCTGGGACGTAGCCGTCGTAACGTACGATGACGTCATCCCA GAAGCGCTCCTCGCGGGCGAGAACGCTCAGGTGCTGCCATCCCAGTGGAAATCATTCCGA CATGAACTTTTGACATACCTTGAACATTTCTTGATGGCCATCGTTAATGGATGCAAATTA TCTGCCCCAGCCTTGAGGACCGAAGTCATGTGGGAAAGTTTTGTCCACTGTTTGAAAAAT CAAAGTCTTATTATAGCTTCCGGAACAGGAAAGACTCAGGGTTACAGTTTAACCCATGCA GCTCCGTCGCAACCTTTCTATCTAATCTTGGATGACAATTTTTATTACCAGAGCATGAGA TATGAAGTCTACCAACTGGCTAGAAAATATTCCTCAGGCTTTTGCCAATTATTTTTAGAT TGTCCAATTGAGTCCTGTCTAGAAAGGAATCGGCAGAGAAGTAAACCAGTACCTGATGAC ACCATACAGCTGATGGCAAGAAAGATAGAATCTCCAAATATTCAGAAAAATGCATGGGAA CACAACAGCCTCACTGTTAGGAGTACAGGACCTTGTTCAGATGACAACGTAGAAGTGATT GATTTACTGATTACTGCTTTGAAAAATCCAATACGATATTTTGAAGAAAATGTAGAACAA AAGGAAACTGATCGAATTATTTGTTCAACTAATACTCTTCATCAAGCTGATCAGCAATTC AGAAGAATTATCTCTCAGACAATGAAGAAAGCCAAAGGT // GL834457.1:subseq(625597,300000) GeneWise match 250000 242984 347.05 - . GL834457.1:subseq(625597,300000)-genewise-prediction-1 GL834457.1:subseq(625597,300000) GeneWise cds 250000 249785 0.00 - 0 GL834457.1:subseq(625597,300000)-genewise-prediction-1 GL834457.1:subseq(625597,300000) GeneWise intron 249784 248861 0.00 - . GL834457.1:subseq(625597,300000)-genewise-prediction-1 GL834457.1:subseq(625597,300000) GeneWise cds 248860 248569 0.00 - 0 GL834457.1:subseq(625597,300000)-genewise-prediction-1 GL834457.1:subseq(625597,300000) GeneWise intron 248568 248091 0.00 - . GL834457.1:subseq(625597,300000)-genewise-prediction-1 GL834457.1:subseq(625597,300000) GeneWise cds 248090 247892 0.00 - 2 GL834457.1:subseq(625597,300000)-genewise-prediction-1 GL834457.1:subseq(625597,300000) GeneWise intron 247891 243722 0.00 - . GL834457.1:subseq(625597,300000)-genewise-prediction-1 GL834457.1:subseq(625597,300000) GeneWise cds 243721 243646 0.00 - 1 GL834457.1:subseq(625597,300000)-genewise-prediction-1 GL834457.1:subseq(625597,300000) GeneWise intron 243645 243080 0.00 - . GL834457.1:subseq(625597,300000)-genewise-prediction-1 GL834457.1:subseq(625597,300000) GeneWise cds 243079 242984 0.00 - 0 GL834457.1:subseq(625597,300000)-genewise-prediction-1 //