genewise output Score 829.24 bits over entire alignment Scores as bits over a synchronous coding model Warning: The bits scores is not probablistically correct for single seqs See WWW help for more info gi|267844904|re 38 KGKCPENGWDESTLELFLHELAIMDSNNFLGNCGVGEREGRVASALVAR KGKCPE+GWDEST+ELFLHELAIMDSNNFLGNCGVGEREGRVAS LVAR KGKCPEDGWDESTIELFLHELAIMDSNNFLGNCGVGEREGRVASGLVAR GL864863.1:subs50000 agatcgggtggaaagctccgcgaagaaatcgatggggaggaggtgtggc agagcaaggaagctatttaatcttagaattgaggtgagaggtccgttcg gtatgattgtatttggtccatctgttctcgccttgaagataagtgatct gi|267844904|re 87 RHY FIHGIGRSGDISAVQPKAAG RHY FIHGIGRSGDI+AVQPKAAG RHY R:R[agg] FIHGIGRSGDIAAVQPKAAG GL864863.1:subs50147 cctAGGTAATTT Intron 1 TAGGtacgagatggagggccaggg gaa <2-----[50158:54590]-2> ttagtggcgatcctacaccg atc cttgtaaatttttgacacag gi|267844904|re 111 SSLLNKITNSLVLDIIKLA VHTV SSLLNKI N LVLDI++LA V +V SSLLNKIANLLVLDILRLA G:G[ggt] VRSV GL864863.1:subs54652 tactaaagattgcgacacgGGTGTGTA Intron 2 CAGGTgctg cgttaatcattttattgtc <1-----[54710:54861]-1> tgct tctgcaactaatgccaggt ttag gi|267844904|re 135 ANCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMITA A+CFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSM+TA ADCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMVTA GL864863.1:subs54876 ggttggcagagaacactttatccaacagataatccagcatttatagag cagtttctccgtgtctgttctgaagcacaattgcgtaaacgtacttcc tccttgagattgtacgtcgaagcgaagagtttgagatggcctacgcta gi|267844904|re 183 FEPVVIENVLEGDELRTDLKAVE FEPVVIENVLEGDELRTDLK VE G:G[ggt] FEPVVIENVLEGDELRTDLKEVE GL864863.1:subs55020 GGTAATAG Intron 3 CAGGTtgcggagagtggggtcagcaggg <1-----[55021:62577]-1> tactttaattagaatgcataata tatggagtgaattgacacggaga gi|267844904|re 207 AKVQELGPDCILCIHSTTSCFAPRVPD AK++ELG D ILC+HSTTSCFAPRVPD AKIKELGADNILCLHSTTSCFAPRVPD R:K[aaa] GL864863.1:subs62649 gaaagcgggaactcctaatttgcagcgAAGTAAGTA Intron 4 cataatgcaattgtaccccgtccgtca <2-----[62732:74681] taaggtgttctttttttactttaggtt gi|267844904|re 234 LEELAVICANYDIPHIVNNAYGVQSSKCMHLIQQ LEELAVICANYDIPHIVNNAYGVQSSKCMHLIQQ LEELAVICANYDIPHIVNNAYGVQSSKCMHLIQQ GL864863.1:subs74679 TAGAcggcggatgatgaccagaagtggcttataccacc -2> taatcttgcaaatcattaacagtaccagtattaa gaagtgcttttttatacctataaatagtgttaag gi|267844904|re 269 GARVGRIDAFVQSLDKNFMVPVGGAI GARVGRIDAFVQSLDKNFMVPVGGAI GARVGRIDAFVQSLDKNFMVPVGGAI GL864863.1:subs74785 GTAAAAA Intron 5 TAGggcggaaggtgcatgaatagcgggga <0-----[74785:79659]-0>gcgtggtacttagtaaatttctggct ttaataattctgcgcattgtaatttc gi|267844904|re 295 IAGFNDSFIQEISKMYP RASASP IAGF+D+F+QEISKMYP RASASP IAGFSDAFVQEISKMYP G:G[gga] RASASP GL864863.1:subs79738 aggtaggtgcgaaaatcGGTAAATA Intron 6 CAGGAagtgtc tcgtgacttaatgatac <1-----[79790:79902]-1> gccccc ttccttcctaaccggta acatca gi|267844904|re 319 SLDVLITLLSLGSNGYKKLLKERK EM SLDV+ITLLSLGSNGYKKLLKERK EM SLDVVITLLSLGSNGYKKLLKERK EM GL864863.1:subs79923 ttgggaatctcgtagtaactagaaGTAAATT Intron 7 CAGga ctatttcttctgcagaaattaaga<0-----[79995:92501]-0>at tatttttaacgaatctggaaaaag ag gi|267844904|re 345 FSYLSNQIKKLSEAYNERLLHTPHNPISL F YLS+++KKLSE +NERLL T HNPISL FLYLSSEVKKLSELHNERLLDTSHNPISL GL864863.1:subs92508 tttttaggaactgccagactgatcacatc ttatcgataatcataaagttaccaactct tatactaaaaaaatctaaggtattttata gi|267844904|re 374 MTLKTLDEHRDKAVTQLGSMLFT M+L TLDE ++AVTQLGSMLFT A:A[gct] MSLTTLDEQTNRAVTQLGSMLFT GL864863.1:subs92595 GGTAATTT Intron 8 CAGCTatcaatggcaaaggaccgtacta <1-----[92596:98425]-1> tctcctaaacagctcatgctttc gctgagtgactatcggtttggtc gi|267844904|re 398 RQVSGA VVPLGSMQTVSGYTFRG RQVSGA VVPLG +QTVSG+TF+G RQVSGA R:R[agg] VVPLGIVQTVSGHTFKG GL864863.1:subs98497 acgtggAGGTAAGCA Intron 9 CAGGggccgagcagagcatag gatcgc <2-----[98517:99992]-2> ttctgttactggactag aagtac tgtggtcatgtcctcac gi|267844904|re 422 FMSHTNNYPCAYLNAASAIGMKMQDVDLFIKRLDRCLKAVRKERSKESD FMSH NNYPCAYLNAASAIGMK QDV+LFIKRLD+CLK+VRKE+SKES FMSHANNYPCAYLNAASAIGMKKQDVELFIKRLDKCLKSVRKEKSKESH GL864863.1:sub100045 tatcgaatctgtcaggtgagaaacgggttaaacgattatgaagaaagac ttcacaaacgcatacccctgtaaaatatttagtaagtactgaaagaaga tgatatcttttccttcaatagaaataagcaagttgtggagaaaacagtt gi|267844904|re 471 -----DNYDKTEDVDIEEMALKLDN-VLLD DN + TEDV+I+EMAL LDN V+LD GDSAVDNCNITEDVNIQEMALNLDNAVVLD GL864863.1:sub100192 ggagggataaagggaacgagtacgagggcg gagctaagatcaatataatctataacttta tctattttcctatgtcgggcatgttatttt // Making a R in phase 2 intron Making a G in phase 1 intron Making a G in phase 1 intron Making a K in phase 2 intron Making a G in phase 1 intron Making a A in phase 1 intron Making a R in phase 2 intron >GL864863.1:subseq(227830,300000).pep KGKCPEDGWDESTIELFLHELAIMDSNNFLGNCGVGEREGRVASGLVARRHYRFIHGIGR SGDIAAVQPKAAGSSLLNKIANLLVLDILRLAGVRSVADCFVVPMATGMSLTLCFLTLRH KRPKAKYIIWPRIDQKSCFKSMVTAGFEPVVIENVLEGDELRTDLKEVEAKIKELGADNI LCLHSTTSCFAPRVPDKLEELAVICANYDIPHIVNNAYGVQSSKCMHLIQQGARVGRIDA FVQSLDKNFMVPVGGAIIAGFSDAFVQEISKMYPGRASASPSLDVVITLLSLGSNGYKKL LKERKEMFLYLSSEVKKLSELHNERLLDTSHNPISLAMSLTTLDEQTNRAVTQLGSMLFT RQVSGARVVPLGIVQTVSGHTFKGFMSHANNYPCAYLNAASAIGMKKQDVELFIKRLDKC LKSVRKEKSKESHGDSAVDNCNITEDVNIQEMALNLDNAVVLD // >GL864863.1:subseq(227830,300000).[50000:100281].sp AAGGGTAAATGTCCGGAAGATGGTTGGGATGAAAGTACTATTGAGCTGTTTCTCCACGAA CTTGCCATTATGGATAGTAACAATTTCCTGGGCAACTGTGGTGTGGGAGAAAGGGAAGGT AGAGTAGCGTCTGGGTTAGTTGCCCGTCGACATTACAGGTTCATTCATGGGATTGGAAGA TCAGGTGATATTGCTGCTGTGCAACCCAAAGCCGCAGGGTCTAGCCTTTTGAACAAAATA GCCAATTTATTAGTTCTGGACATCCTAAGGCTGGCTGGTGTTCGTTCAGTGGCTGACTGC TTTGTTGTGCCAATGGCAACTGGTATGAGTCTAACCCTGTGTTTCTTGACATTACGGCAC AAGAGACCAAAGGCAAAGTATATTATTTGGCCACGGATAGATCAGAAGTCCTGCTTTAAA TCCATGGTCACTGCAGGTTTTGAACCTGTGGTGATAGAGAATGTGTTAGAAGGTGATGAG TTACGCACAGACCTGAAGGAAGTGGAAGCTAAAATAAAGGAGCTTGGGGCTGATAACATT CTTTGTCTTCATTCTACTACATCCTGTTTTGCTCCAAGGGTGCCTGATAAACTGGAAGAA CTGGCTGTGATCTGTGCTAATTATGATATTCCACATATAGTCAACAATGCATATGGAGTA CAATCTTCAAAGTGTATGCATCTTATACAACAGGGTGCTCGAGTAGGTAGAATAGATGCT TTCGTTCAGAGCTTGGACAAAAATTTTATGGTTCCAGTAGGTGGTGCTATCATTGCTGGC TTCAGTGATGCCTTCGTTCAAGAAATCAGCAAGATGTATCCAGGAAGAGCCTCAGCTTCC CCATCTTTAGATGTTGTTATTACTTTACTATCCCTGGGATCAAATGGCTATAAGAAGCTA TTAAAAGAAAGAAAGGAAATGTTTTTATATTTATCCAGTGAAGTAAAAAAACTATCAGAA CTTCACAATGAAAGACTGTTGGATACATCTCATAATCCTATATCTCTAGCTATGTCCCTT ACGACATTGGATGAGCAAACCAATAGAGCTGTCACGCAGCTTGGTTCTATGCTGTTTACC AGACAAGTGTCTGGAGCCAGGGTTGTGCCTCTGGGGATTGTCCAAACTGTGAGTGGCCAC ACTTTCAAAGGCTTTATGTCACATGCAAATAACTATCCTTGTGCTTACCTCAATGCTGCC TCAGCAATTGGAATGAAAAAACAAGATGTAGAATTGTTCATAAAAAGGCTTGATAAGTGT TTGAAGTCAGTGAGAAAAGAAAAAAGCAAAGAGAGTCATGGTGACAGTGCAGTTGATAAT TGTAACATCACTGAAGATGTGAATATCCAGGAGATGGCCTTAAATCTGGATAATGCAGTT GTTCTTGAT // GL864863.1:subseq(227830,300000) GeneWise match 50000 100281 833.23 + . GL864863.1:subseq(227830,300000)-genewise-prediction-1 GL864863.1:subseq(227830,300000) GeneWise cds 50000 50157 0.00 + 0 GL864863.1:subseq(227830,300000)-genewise-prediction-1 GL864863.1:subseq(227830,300000) GeneWise intron 50158 54590 0.00 + . GL864863.1:subseq(227830,300000)-genewise-prediction-1 GL864863.1:subseq(227830,300000) GeneWise cds 54591 54709 0.00 + 1 GL864863.1:subseq(227830,300000)-genewise-prediction-1 GL864863.1:subseq(227830,300000) GeneWise intron 54710 54861 0.00 + . GL864863.1:subseq(227830,300000)-genewise-prediction-1 GL864863.1:subseq(227830,300000) GeneWise cds 54862 55020 0.00 + 2 GL864863.1:subseq(227830,300000)-genewise-prediction-1 GL864863.1:subseq(227830,300000) GeneWise intron 55021 62577 0.00 + . GL864863.1:subseq(227830,300000)-genewise-prediction-1 GL864863.1:subseq(227830,300000) GeneWise cds 62578 62731 0.00 + 2 GL864863.1:subseq(227830,300000)-genewise-prediction-1 GL864863.1:subseq(227830,300000) GeneWise intron 62732 74681 0.00 + . GL864863.1:subseq(227830,300000)-genewise-prediction-1 GL864863.1:subseq(227830,300000) GeneWise cds 74682 74784 0.00 + 1 GL864863.1:subseq(227830,300000)-genewise-prediction-1 GL864863.1:subseq(227830,300000) GeneWise intron 74785 79659 0.00 + . GL864863.1:subseq(227830,300000)-genewise-prediction-1 GL864863.1:subseq(227830,300000) GeneWise cds 79660 79789 0.00 + 0 GL864863.1:subseq(227830,300000)-genewise-prediction-1 GL864863.1:subseq(227830,300000) GeneWise intron 79790 79902 0.00 + . GL864863.1:subseq(227830,300000)-genewise-prediction-1 GL864863.1:subseq(227830,300000) GeneWise cds 79903 79994 0.00 + 2 GL864863.1:subseq(227830,300000)-genewise-prediction-1 GL864863.1:subseq(227830,300000) GeneWise intron 79995 92501 0.00 + . GL864863.1:subseq(227830,300000)-genewise-prediction-1 GL864863.1:subseq(227830,300000) GeneWise cds 92502 92595 0.00 + 0 GL864863.1:subseq(227830,300000)-genewise-prediction-1 GL864863.1:subseq(227830,300000) GeneWise intron 92596 98425 0.00 + . GL864863.1:subseq(227830,300000)-genewise-prediction-1 GL864863.1:subseq(227830,300000) GeneWise cds 98426 98516 0.00 + 2 GL864863.1:subseq(227830,300000)-genewise-prediction-1 GL864863.1:subseq(227830,300000) GeneWise intron 98517 99992 0.00 + . GL864863.1:subseq(227830,300000)-genewise-prediction-1 GL864863.1:subseq(227830,300000) GeneWise cds 99993 100281 0.00 + 1 GL864863.1:subseq(227830,300000)-genewise-prediction-1 // genewise output Score 23.42 bits over entire alignment Scores as bits over a synchronous coding model Warning: The bits scores is not probablistically correct for single seqs See WWW help for more info gi|267844904|re 411 MQTVSGYTFRGFMSHTNNYPCAYLNAASAIGMKMQDVDLF +Q + Y+F F+SH ++Y Y ++A+ +++Q V LF FQQLISYSFSLFISHCHHY--CYFVLSTAVSLQVQKVILF GL864863.1:su-246982 tcccaattttttatctcct tttgttaggttcgcagact taattgactctttcagaaa gatttccctctataatttt tgatttctttactatttcc ctttagtattagaagcact // >GL864863.1:subseq(227830,300000).pep FQQLISYSFSLFISHCHHYCYFVLSTAVSLQVQKVILF // >GL864863.1:subseq(227830,300000).[246982:246867].sp TTTCAGCAACTTATTAGTTACTCTTTTTCTTTATTCATTTCACATTGTCATCACTACTGC TATTTTGTTTTATCGACTGCAGTTTCTTTACAGGTACAAAAGGTCATACTCTTT // GL864863.1:subseq(227830,300000) GeneWise match 246982 246869 24.42 - . GL864863.1:subseq(227830,300000)-genewise-prediction-1 GL864863.1:subseq(227830,300000) GeneWise cds 246982 246869 0.00 - 0 GL864863.1:subseq(227830,300000)-genewise-prediction-1 //