genewise output
Score 22.45 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPS2a             14 PGPSPGSGCALGPSTS                                  
                     P P PGSGC +G S S                                  
                     PQPQPGSGCWVGRSLS                                  
GL867652.1     48051 cccccgagttggaaca                                  
                     cacacgggggtgggtg                                  
                     tgaacatatggggtcc                                  


//
>GL867652.1.pep
PQPQPGSGCWVGRSLS
//
>GL867652.1.[48051:48098].sp
CCTCAGCCACAACCCGGAAGTGGATGTTGGGTGGGGAGGAGTCTCAGC
//
GL867652.1	GeneWise	match	48051	48098	22.45	+	.	GL867652.1-genewise-prediction-1
GL867652.1	GeneWise	cds	48051	48098	0.00	+	0	GL867652.1-genewise-prediction-1
//

genewise output
Score 328.52 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPS2a            101 LGIGTDCCVIPLRHGGLSLVQTTDFFYPLVDDPYMM              
                     +GIG D CVIPLRHGGLSLVQTTDFFYPLV+DPYMM              
                     VGIGMDSCVIPLRHGGLSLVQTTDFFYPLVEDPYMM              
GL867652.1   -108447 ggagagttgactacggctcgcaagtttctgggctaa              
                     tgtgtacgttctgaggtcttaccattacttaacatt              
                     agaagtttgtcgatatcctgacacctttgtacccgg              


SPS2a            137                        GRIACANVLSDLYAMGITECDNMLML 
                                            GRIACANVLSDLYAMGIT+CDNMLML 
                                            GRIACANVLSDLYAMGITDCDNMLML 
GL867652.1   -108339 GTAAGTG  Intron 1   CAGgcagtgagcagctgagaagtgaacac 
                     <0-----[108339:10721-0>ggtcgcattgatactgtcagaatttt 
                                            agtctccgctcctcgcttcttcgggc 


SPS2a            163 LSVSQKMTDE                       ERDKVMPLIVRGFRDA 
                     LSVSQKM++E                       ER+K+MPL+V+GFRDA 
                     LSVSQKMSEE                       EREKIMPLMVKGFRDA 
GL867652.1   -107132 cagacaaaggGTAAGGA  Intron 2   CAGgcgaaaccagagtcgg 
                     tgtgaatgaa<0-----[107102:10595-0>agaattctttagtgac 
                     ccccaggtgg                       aaagcgcggcattgtt 


SPS2a            189 AEAAGTSVTGGQTVLNPWVIVGGAASVVCQRQEFI               
                     AE  GTSVTGG TV+NPW+I+GG A+VVCQ  EFI               
                     AEEGGTSVTGGHTVINPWIIIGGVATVVCQPNEFI               
GL867652.1   -105902 gggggatgaggcagaactaaaggggaggtccagta               
                     caaggcctcggacttacgtttggtccttgacaatt               
                     tgacacggggattgattgtctattctgtcgctgcc               


SPS2a            224                           PDSAVPGDVLVLTKPLGTQVAVT 
                                               PDSA+PGDVLVLTKPLGTQVAV  
                                V:M[atg]       PDSAIPGDVLVLTKPLGTQVAVN 
GL867652.1   -105797 ATGTGAGTA  Intron 3   CAGGcgagacgggcgtaaccgacggga 
                       <2-----[105795:10444-2> cagctcgattttcactgcatcta 
                                               actattgtgcggcaaaaggctct 


SPS2a            248 AHQWLDN                       PERWNKIKLVVTREEVEAA 
                     AHQWLDN                       PE+WNKIKLVV++EEVE A 
                     AHQWLDN                       PEKWNKIKLVVSKEEVELA 
GL867652.1   -104369 gcctcgaGTAAGCA  Intron 4   CAGcgataaaacggtaggggcg 
                     caagtaa<0-----[104348:10317-0>caagaatatttcaaatatc 
                     ccgggtc                       agagtaaggggcaaagaac 


SPS2a            274 YREAMFSMATLNRT                                    
                     Y+EAMFSMA LNRT                                    
                     YQEAMFSMAMLNRT                                    
GL867652.1   -103114 tcggataagacaaa                                    
                     aaacttgtcttagc                                    
                     tgaagtcgtggtat                                    


//
Making a M in phase 2 intron
>GL867652.1.pep
VGIGMDSCVIPLRHGGLSLVQTTDFFYPLVEDPYMMGRIACANVLSDLYAMGITDCDNML
MLLSVSQKMSEEEREKIMPLMVKGFRDAAEEGGTSVTGGHTVINPWIIIGGVATVVCQPN
EFIMPDSAIPGDVLVLTKPLGTQVAVNAHQWLDNPEKWNKIKLVVSKEEVELAYQEAMFS
MAMLNRT
//
>GL867652.1.[108447:103071].sp
GTAGGGATAGGAATGGATTCTTGTGTGATTCCCTTGAGACATGGAGGTCTCTCCCTTGTG
CAAACCACAGACTTCTTTTATCCTTTGGTTGAAGACCCCTACATGATGGGACGGATTGCC
TGTGCCAACGTGCTCAGTGACCTCTATGCCATGGGCATTACTGACTGTGATAACATGCTG
ATGCTCCTCAGCGTCAGCCAAAAGATGAGTGAGGAGGAACGAGAAAAGATCATGCCCCTG
ATGGTCAAAGGTTTTCGGGATGCTGCTGAGGAAGGCGGAACCTCGGTGACGGGGGGACAT
ACTGTGATAAATCCTTGGATTATCATTGGAGGTGTTGCCACTGTGGTTTGCCAGCCCAAT
GAGTTCATCATGCCAGACAGTGCAATTCCTGGGGATGTGCTCGTGTTGACCAAACCACTA
GGAACGCAGGTCGCTGTCAATGCCCACCAGTGGCTGGATAACCCAGAGAAATGGAATAAA
ATAAAGCTGGTGGTGTCCAAAGAAGAAGTGGAACTAGCCTATCAGGAAGCAATGTTTAGC
ATGGCTATGCTGAATAGAACT
//
GL867652.1	GeneWise	match	108447	103073	328.52	-	.	GL867652.1-genewise-prediction-1
GL867652.1	GeneWise	cds	108447	108340	0.00	-	0	GL867652.1-genewise-prediction-1
GL867652.1	GeneWise	intron	108339	107211	0.00	-	.	GL867652.1-genewise-prediction-1
GL867652.1	GeneWise	cds	107210	107103	0.00	-	0	GL867652.1-genewise-prediction-1
GL867652.1	GeneWise	intron	107102	105951	0.00	-	.	GL867652.1-genewise-prediction-1
GL867652.1	GeneWise	cds	105950	105796	0.00	-	0	GL867652.1-genewise-prediction-1
GL867652.1	GeneWise	intron	105795	104440	0.00	-	.	GL867652.1-genewise-prediction-1
GL867652.1	GeneWise	cds	104439	104349	0.00	-	1	GL867652.1-genewise-prediction-1
GL867652.1	GeneWise	intron	104348	103172	0.00	-	.	GL867652.1-genewise-prediction-1
GL867652.1	GeneWise	cds	103171	103073	0.00	-	0	GL867652.1-genewise-prediction-1
//