genewise output
Score 594.34 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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SPP02              1 MAASLWMGD                       LEPYMDENFISRAFATM 
                     MAASLWMGD                       LEPYMDENFISRAFATM 
                     MAASLWMGD                       LEPYMDENFISRAFATM 
gi|357434040|-143010 aggactaggGTGAGTG  Intron 1   CAGcgctaggatatagtgaa 
                     tccgtgtga<0-----[142983:14248-0>tacataaattcgctcct 
                     ggccgggac                       gaccgtgccccaccccg 


SPP02             27 GETVMSVKIIRNRLT                          IPAGYCFV 
                     GETVMSVKIIRNRLT                          IPAGYCFV 
                     GETVMSVKIIRNRLT           G:G[ggg]       IPAGYCFV 
gi|357434040|-142433 ggagaagaaacaccaGGGTAAGTC  Intron 2   CAGGacggtttg 
                     gacttgtattgagtc  <2-----[142386:13151-2> tccgagtt 
                     ggtagccatcacccc                          catcccta 


SPP02             51 EFADLATAEKCLHKINGKPLPGATP                       A 
                     EFADLATAEKCLHKINGKPLPGATP                       A 
                     EFADLATAEKCLHKINGKPLPGATP                       A 
gi|357434040|-131488 gtggtgaggattcaaagacccggacGTAAGGA  Intron 3   CAGg 
                     atcatcccaagtaatagactcgccc<0-----[131413:13078-0>c 
                     acatgcatggtgtattgactaacat                       g 


SPP02             77 KRFKLNYATYGKQPDN                          PEYSLFV 
                     KRFKLNYATYGKQPDN                          PEYSLFV 
                     KRFKLNYATYGKQPDN           S:S[agc]       PEYSLFV 
gi|357434040|-130783 actacatgatgaccgaAGGTAGGTA  Intron 4   CAGCcgttctg 
                     agtataaccagaacaa  <2-----[130733:12736-2> caacttt 
                     attagctcttgaaatc                          tgtcctg 


SPP02            101 GDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVS              
                     GDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVS              
                     GDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVS              
gi|357434040|-127338 ggcacgggggactgttgagtcttcggaggtgcaggt              
                     gatccataagttaatttataccggggatttaacgtc              
                     gcgcacgttcggtacccactcctgacggtgcgacgt              


SPP02            137                           GYGFVKFTDELEQKRALTECQGA 
                                               GYGFVKFTDELEQKRALTECQGA 
                                K:K[aag]       GYGFVKFTDELEQKRALTECQGA 
gi|357434040|-127230 AAGTAAGGC  Intron 5   CAGGgtgtgataggcgcacgcagtcgg 
                       <2-----[127228:12363-2> gagttatcaataaagctcagagc 
                                               ttttgacatagagaacgggcgaa 


SPP02            161 VGLGSKPVRLSVAIPK                          SRVKPVE 
                     VGLGSKPVRLSVAIPK                          SRVKPVE 
                     VGLGSKPVRLSVAIPK           A:A[gcg]       SRVKPVE 
gi|357434040|-123566 ggcgtacgccaggacaGCGTGAGTC  Intron 6   AAGGacgacgg 
                     tgtgcactgtgtctca  <2-----[123516:11925-2> ggtacta 
                     gaggtatgggcgacta                          ctagaga 


SPP02            185 YSQMYSYSYNQYYQQYQNYYAQWGYDQNTGSYSYSYPQYGYTQSTMQ   
                     YSQMYSYSYNQYYQQYQNYYAQWGYDQNTGSYSYSYPQYGYTQSTMQ   
                     YSQMYSYSYNQYYQQYQNYYAQWGYDQNTGSYSYSYPQYGYTQSTMQ   
gi|357434040|-119229 tacatatatacttcctcattgctgtgcaagatatatcctgtacaaac   
                     agatagagaaaaaaaaaaaacaggaaaacggagagacaagacagcta   
                     ttggcttcccgtcggcgccttggctcgcaccccctccgtcttgccgg   


SPP02            232                        TYEEVGDDALE                
                                            TYEEVGDDALE                
                                            TYEEVGDDALE                
gi|357434040|-119088 GTAACCA  Intron 7   CAGatgggggggtg                
                     <0-----[119088:11856-0>caaatgaacta                
                                            ataatattaga                


SPP02            243                           PMPQLDVTEANKEFMEQSEELYD 
                                               PMPQLDVTEANKEFMEQSEELYD 
                               D:D[gac]        PMPQLDVTEANKEFMEQSEELYD 
gi|357434040|-118528 GGTAAGGG  Intron 8   CAGACcacccggaggaagtagcaggctg 
                      <1-----[118527:11425-1>  ctcatatcacaaattaagaataa 
                                               cgaggtgtgccggcgagtgggtc 


SPP02            267 ALMDCHWQPLDTVSSEIPAMM                             
                     ALMDCHWQPLDTVSSEIPAMM                             
                     ALMDCHWQPLDTVSSEIPAMM                             
gi|357434040|-114178 gcagtctcccgagttgacgaa                             
                     cttagagactactccatcctt                             
                     tggctcggcgcagtagctcgg                             


//
Making a G in phase 2 intron
Making a S in phase 2 intron
Making a K in phase 2 intron
Making a A in phase 2 intron
Making a D in phase 1 intron
>gi|357434040|gb|JH378323.1|:subseq(1,328368).pep
MAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEK
CLHKINGKPLPGATPAKRFKLNYATYGKQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVY
PSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPKASRV
KPVEYSQMYSYSYNQYYQQYQNYYAQWGYDQNTGSYSYSYPQYGYTQSTMQTYEEVGDDA
LEDPMPQLDVTEANKEFMEQSEELYDALMDCHWQPLDTVSSEIPAMM
//
>gi|357434040|gb|JH378323.1|:subseq(1,328368).[143010:114114].sp
ATGGCGGCCAGCCTGTGGATGGGAGACCTGGAACCCTACATGGATGAGAACTTCATCTCC
AGAGCCTTCGCCACCATGGGGGAGACTGTAATGAGCGTCAAAATTATCCGAAACCGCCTC
ACCGGGATCCCAGCTGGCTACTGCTTTGTAGAATTCGCAGATTTGGCCACAGCTGAGAAG
TGTTTGCATAAAATTAATGGGAAACCCCTTCCAGGAGCCACACCTGCGAAACGTTTTAAA
CTGAACTATGCCACTTATGGGAAACAACCAGATAACAGCCCTGAGTATTCCCTCTTTGTG
GGGGACCTGACCCCAGACGTGGATGATGGCATGCTGTATGAATTCTTCGTCAAAGTCTAT
CCCTCCTGTCGGGGAGGCAAGGTGGTTTTGGACCAGACAGGCGTGTCTAAGGGTTATGGT
TTTGTGAAATTCACAGATGAACTGGAACAGAAACGAGCCCTGACGGAGTGCCAGGGAGCA
GTGGGACTGGGGTCTAAACCTGTGCGGCTGAGCGTGGCAATCCCTAAAGCGAGCCGTGTA
AAGCCAGTGGAATATAGTCAGATGTACAGTTATAGCTACAACCAGTATTACCAGCAGTAC
CAGAACTACTATGCTCAGTGGGGCTATGACCAGAACACAGGCAGCTACAGCTACAGTTAC
CCCCAGTATGGCTATACTCAGAGCACCATGCAGACATATGAAGAAGTTGGAGATGATGCA
TTGGAAGACCCCATGCCACAGCTGGATGTGACTGAGGCCAACAAGGAGTTCATGGAACAG
AGTGAGGAGCTGTATGACGCTCTGATGGACTGTCACTGGCAGCCCCTGGACACAGTGTCT
TCAGAGATCCCTGCCATGATG
//
gi|357434040|gb|JH378323.1|:subseq(1,328368)	GeneWise	match	143010	114116	594.34	-	.	gi|357434040|gb|JH378323.1|:subseq(1,328368)-genewise-prediction-1
gi|357434040|gb|JH378323.1|:subseq(1,328368)	GeneWise	cds	143010	142984	0.00	-	0	gi|357434040|gb|JH378323.1|:subseq(1,328368)-genewise-prediction-1
gi|357434040|gb|JH378323.1|:subseq(1,328368)	GeneWise	intron	142983	142485	0.00	-	.	gi|357434040|gb|JH378323.1|:subseq(1,328368)-genewise-prediction-1
gi|357434040|gb|JH378323.1|:subseq(1,328368)	GeneWise	cds	142484	142387	0.00	-	0	gi|357434040|gb|JH378323.1|:subseq(1,328368)-genewise-prediction-1
gi|357434040|gb|JH378323.1|:subseq(1,328368)	GeneWise	intron	142386	131514	0.00	-	.	gi|357434040|gb|JH378323.1|:subseq(1,328368)-genewise-prediction-1
gi|357434040|gb|JH378323.1|:subseq(1,328368)	GeneWise	cds	131513	131414	0.00	-	1	gi|357434040|gb|JH378323.1|:subseq(1,328368)-genewise-prediction-1
gi|357434040|gb|JH378323.1|:subseq(1,328368)	GeneWise	intron	131413	130787	0.00	-	.	gi|357434040|gb|JH378323.1|:subseq(1,328368)-genewise-prediction-1
gi|357434040|gb|JH378323.1|:subseq(1,328368)	GeneWise	cds	130786	130734	0.00	-	0	gi|357434040|gb|JH378323.1|:subseq(1,328368)-genewise-prediction-1
gi|357434040|gb|JH378323.1|:subseq(1,328368)	GeneWise	intron	130733	127361	0.00	-	.	gi|357434040|gb|JH378323.1|:subseq(1,328368)-genewise-prediction-1
gi|357434040|gb|JH378323.1|:subseq(1,328368)	GeneWise	cds	127360	127229	0.00	-	1	gi|357434040|gb|JH378323.1|:subseq(1,328368)-genewise-prediction-1
gi|357434040|gb|JH378323.1|:subseq(1,328368)	GeneWise	intron	127228	123637	0.00	-	.	gi|357434040|gb|JH378323.1|:subseq(1,328368)-genewise-prediction-1
gi|357434040|gb|JH378323.1|:subseq(1,328368)	GeneWise	cds	123636	123517	0.00	-	1	gi|357434040|gb|JH378323.1|:subseq(1,328368)-genewise-prediction-1
gi|357434040|gb|JH378323.1|:subseq(1,328368)	GeneWise	intron	123516	119252	0.00	-	.	gi|357434040|gb|JH378323.1|:subseq(1,328368)-genewise-prediction-1
gi|357434040|gb|JH378323.1|:subseq(1,328368)	GeneWise	cds	119251	119089	0.00	-	1	gi|357434040|gb|JH378323.1|:subseq(1,328368)-genewise-prediction-1
gi|357434040|gb|JH378323.1|:subseq(1,328368)	GeneWise	intron	119088	118562	0.00	-	.	gi|357434040|gb|JH378323.1|:subseq(1,328368)-genewise-prediction-1
gi|357434040|gb|JH378323.1|:subseq(1,328368)	GeneWise	cds	118561	118528	0.00	-	0	gi|357434040|gb|JH378323.1|:subseq(1,328368)-genewise-prediction-1
gi|357434040|gb|JH378323.1|:subseq(1,328368)	GeneWise	intron	118527	114250	0.00	-	.	gi|357434040|gb|JH378323.1|:subseq(1,328368)-genewise-prediction-1
gi|357434040|gb|JH378323.1|:subseq(1,328368)	GeneWise	cds	114249	114116	0.00	-	2	gi|357434040|gb|JH378323.1|:subseq(1,328368)-genewise-prediction-1
//