genewise output
Score 1260.73 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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SPP00000038_1.0   13 LGHIDSGKTALARALSTTASTAAFDKQPQSRERGITLDLGFSCFSVPLP 
                     +GHIDSGKTALARALSTTASTAAFDKQPQSRERGITLDLGFSCFSVPLP 
                     xGHIDSGKTALARALSTTASTAAFDKQPQSRERGITLDLGFSCFSVPLP 
gi|357434241|g149997 Ngcagagaagcgcgcaaagtaggtgacccacgcgaacgcgtttttgccc 
                     tgataggacctcgctgccccccctaaacaggaggtctatgtcgtctctc 
                     gccctccggggggcgccacttccccggggccgcccgccgccgccggggc 


SPP00000038_1.0   62 ARLRSSLPEFQAAPEAEPEPGEPLLQVTLVDCPGHASLIRTIIG      
                     ARLRS+LPEFQAAPEA+PEPGEPLLQVTLVDCPGHASLIRTIIG      
                     ARLRSALPEFQAAPEADPEPGEPLLQVTLVDCPGHASLIRTIIG      
gi|357434241|g150144 gccctgccgtcggcgggcgcggccccgacggtcgcgtcacaaag      
                     cgtgcctcatacccacacacgacttatcttagcgaccttgcttg      
                     gcgactgcgcgagcactcgccgagtgcggtctcgcccccgcccc      


SPP00000038_1.0  106                           AQIIDLMMLVIDVTKGMQTQSAE 
                                               AQIIDLMMLVIDVTKGMQTQSAE 
                               G:G[gga]        AQIIDLMMLVIDVTKGMQTQSAE 
gi|357434241|g150276 GGTGAGCG  Intron 1   CAGGAgcaagcaacgaggaagacactgg 
                      <1-----[150277:24718-1>  cattattttttatcagtacacca 
                                               cgcttggggcctgcggggggcga 


SPP00000038_1.0  130 CLVIGQIACQKLVVVLNKIDLLPEGKRQAAIDKMTKKMQKTLENT     
                     CLVIGQIACQKLVVVLNKIDLL EG+RQA IDKMTKKMQKTLENT     
                     CLVIGQIACQKLVVVLNKIDLLAEGRRQATIDKMTKKMQKTLENT     
gi|357434241|g247256 tcgagcagtcacgggcaaagctgggaacgaagaaaaaacaacgaa     
                     gtttgatcgaatttttaatattcagggacctaatcaataactaac     
                     ctaccgtccggccgggcaaccataagagaattagcgagggcagcc     


SPP00000038_1.0  175                           FRGAPIIPVAAKPGGPEAPETEA 
                                               FRGAPIIPVAAKPGGPEAPETEA 
                                K:K[aag]       FRGAPIIPVAAKPGGPEAPETEA 
gi|357434241|g247391 AAGTAGGTC  Intron 2   CAGGtcggcaacgggacggcggcgagg 
                       <2-----[247393:26836-2> tggccttctccacggcaccacac 
                                               catagtacgacgggaagctatat 


SPP00000038_1.0  199 PQGIPELIE                       LLTSQISIPTRDPSGPF 
                     PQGIPELIE                       LLTSQISIPTRDPSGPF 
                     PQGIPELIE                       LLTSQISIPTRDPSGPF 
gi|357434241|g268433 ccgacgcagGTATTGT  Intron 3   TAGccatcatacaagctgct 
                     cagtcatta<0-----[268460:27100-0>ttccatctccgaccgct 
                     agctaactg                       cggcgtccggaccgagc 


SPP00000038_1.0  225 LMSVDHCFSIKGQGTVMTGTILSGSISLGDSVEIPALK            
                     LMSVDHCFSIKGQGTVMTGTILSGSISLGDSVEIPALK            
                     LMSVDHCFSIKGQGTVMTGTILSGSISLGDSVEIPALK            
gi|357434241|g271058 catggctttaagcgagaagaactgtaacggaggacgca            
                     ttctaagtctagagcttcgcttcgctgtgagtatccta            
                     cgtgcctcccacactggagcccaccccctttggttccg            


SPP00000038_1.0  263                        VVKKVKSMQMFHMPITSAMQGDRLGI 
                                            VVKKVKSMQMFHMPITSAMQGDRLGI 
                                            VVKKVKSMQMFHMPITSAMQGDRLGI 
gi|357434241|g271172 GTCAGTC  Intron 4   CAGggaagatacatcacaatgacggccga 
                     <0-----[271172:34857-0>ttaatactattatctccctagagtgt 
                                            ggggggcgggctgcctacgaacggcc 


SPP00000038_1.0  289 CVTQFDPKLLERGLVCAPESLHTVHAALISVEKIPYFRGPLQTKAKFHI 
                     CVTQFDPKLLERGLVCAPESLHTVHAALISVEKI YFRGPLQTKAKFHI 
                     CVTQFDPKLLERGLVCAPESLHTVHAALISVEKITYFRGPLQTKAKFHI 
gi|357434241|g348654 tgactgcaccgcgtgtgcgtccagcggcatggaaattcgcccaagatca 
                     gtcatacattaggttgccactactaccttctaatcatggctacacatat 
                     tccgtccggggcgggtctgcgctccactctgagaattggcggcgcgcct 


SPP00000038_1.0  338 TVGHETVMGRLMFFSPAPDNFDQEPILDSFNFSQEYLFQEQYLSKDLTP 
                     TVGHETVMG+LMFF+PAPDNFDQEPILDSF+F+QEYLFQEQYL KDL   
                     TVGHETVMGKLMFFTPAPDNFDQEPILDSFDFTQEYLFQEQYLCKDLAS 
gi|357434241|g348801 aggcgagagatattacgcgatgcgcacgttgtacgtctcgctttagtgt 
                     ctgaacttgattttccccaataaacttactatcaaattaaaatgaatcc 
                     agctgatgcgggcccttatctcgatagcctcctaacccgggcacgtgaa 


SPP00000038_1.0  387 AVTDNDEADKKAGQATEGHCPRQQWALVEFEKPVTCPRLCLVIGSRLDA 
                     AVTDNDEADKKAGQATEGHCPRQQWALVEFEKPVTCPRLCLVIGSRLDA 
                     AVTDNDEADKKAGQATEGHCPRQQWALVEFEKPVTCPRLCLVIGSRLDA 
gi|357434241|g348948 ggagaggggaaggcgaggctcccctgcggtgacgatccctcgagtacgg 
                     ctcaaaacaaacgaccagagcgaagcttataactcgcgtgtttgcgtac 
                     agacttgccggtcgcagctctggggcgggtggcccctgacggcccgatg 


SPP00000038_1.0  436 DIHTNTCRLAFHGILLHGLEDRNYADSFLPRLKVYKLKHKHGLVER    
                     DIH NTCRLAFHGILLHGLEDRNYADSFLPRLKVYKLKHKHGLVER    
                     DIHANTCRLAFHGILLHGLEDRNYADSFLPRLKVYKLKHKHGLVER    
gi|357434241|g349095 gacgaatccgtcgacccgcggaatggatccacagtacacacgcggc    
                     atacacggtctagtttagtaagaacagttcgtataataaaagttag    
                     cttccacggcctccgctgggcgctccccgcgaggcgggcgtctggg    


SPP00000038_1.0  482                        AMDDYSVIGRSLFKKETNIQLFVGLK 
                                            AMDDYSVIGRSLFKKETNIQLFVGLK 
                                            AMDDYSVIGRSLFKKETNIQLFVGLK 
gi|357434241|g349233 GTGAGCA  Intron 5   CAGgaggtagagctctaagaaacctggca 
                     <0-----[349233:36576-0>ctaaagttggcttaaacatatttgta 
                                            agtcctgccccgcaggcccgctggcg 


SPP00000038_1.0  508 VHLSTGELGIIDSAFGQSGKFKIHIP                        
                     VHLSTGELGIIDSAFGQSGKFKIHIP                        
                     VHLSTGELGIIDSAFGQSGKFKIHIP          G:G[ggt]      
gi|357434241|g365840 gcctaggcgaagagtgcagataacacGGTAAGTG  Intron 6      
                     tatccgatgttagctgaggatatatc <1-----[365919:417093  
                     gcgctgagcccctctcgccgcgccca                        


SPP00000038_1.0  534      GLSPESKKILTPALKKRARAGRGEATRQEESAERSEPSQHVVLS 
                          GLSPESKKILTPALKKR RAGRGEATRQEES ER+EP+QHV LS 
                          GLSPESKKILTPALKKRGRAGRGEATRQEESTERTEPAQHVALS 
gi|357434241|g417091 TAGGTgcacgtaaacacgcaacgcggcgggaacggaagcagcgccggca 
                     -1>  gtgcacaattccctaagggcgggaccgaaagcagcaccaatctg 
                          ccctgcggcgtcccggccgtctggccggggccggcgttgcggcc 


SPP00000038_1.0  579 LTFKRYVFDTHKRMVQSP                                
                     L+FKRYVFDTHKRMVQSP                                
                     LSFKRYVFDTHKRMVQSP                                
gi|357434241|g417228 cttactgtgacacagctc                                
                     tctagattacaagttacc                                
                     gtcgttcccccgcgcgtc                                


//
Making a G in phase 1 intron
Making a K in phase 2 intron
Making a G in phase 1 intron
>gi|357434241|gb|JH378122.1|:subseq(402627,567281).pep
xGHIDSGKTALARALSTTASTAAFDKQPQSRERGITLDLGFSCFSVPLPARLRSALPEFQ
AAPEADPEPGEPLLQVTLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGMQTQSAECLV
IGQIACQKLVVVLNKIDLLAEGRRQATIDKMTKKMQKTLENTKFRGAPIIPVAAKPGGPE
APETEAPQGIPELIELLTSQISIPTRDPSGPFLMSVDHCFSIKGQGTVMTGTILSGSISL
GDSVEIPALKVVKKVKSMQMFHMPITSAMQGDRLGICVTQFDPKLLERGLVCAPESLHTV
HAALISVEKITYFRGPLQTKAKFHITVGHETVMGKLMFFTPAPDNFDQEPILDSFDFTQE
YLFQEQYLCKDLASAVTDNDEADKKAGQATEGHCPRQQWALVEFEKPVTCPRLCLVIGSR
LDADIHANTCRLAFHGILLHGLEDRNYADSFLPRLKVYKLKHKHGLVERAMDDYSVIGRS
LFKKETNIQLFVGLKVHLSTGELGIIDSAFGQSGKFKIHIPGGLSPESKKILTPALKKRG
RAGRGEATRQEESTERTEPAQHVALSLSFKRYVFDTHKRMVQSP
//
>gi|357434241|gb|JH378122.1|:subseq(402627,567281).[149997:417281].sp
NTGGGCCACATCGATAGCGGCAAGACGGCGCTGGCGCGGGCCCTGAGCACCACAGCCTCT
ACTGCCGCCTTCGACAAGCAGCCGCAGAGCCGCGAGCGCGGCATCACGCTCGACCTGGGC
TTCTCGTGCTTCTCGGTGCCGCTGCCCGCGCGCCTGCGATCCGCTCTGCCCGAGTTCCAG
GCAGCGCCCGAAGCCGATCCCGAGCCCGGCGAGCCACTGCTTCAGGTCACGCTGGTTGAC
TGTCCCGGGCACGCCTCCCTCATCCGGACCATCATCGGCGGAGCCCAGATCATTGATCTG
ATGATGCTGGTCATCGATGTGACCAAGGGGATGCAGACGCAGTCCGCGGAATGCCTTGTA
ATCGGCCAGATTGCCTGCCAGAAGCTCGTCGTGGTGCTGAACAAAATAGACCTCTTAGCT
GAAGGAAGGAGACAGGCAACAATTGATAAAATGACCAAGAAAATGCAGAAGACCCTAGAG
AACACCAAGTTCCGAGGTGCACCGATTATACCCGTGGCAGCCAAGCCGGGGGGACCAGAG
GCCCCTGAAACTGAAGCTCCACAGGGCATTCCAGAACTCATTGAGCTCCTGACGTCCCAG
ATTTCCATCCCGACGAGAGACCCCTCGGGACCGTTCCTCATGTCTGTGGACCACTGTTTC
TCCATCAAAGGCCAAGGCACTGTGATGACAGGGACCATCCTCTCAGGCTCCATCAGCCTC
GGTGATAGTGTGGAGATTCCTGCCCTCAAGGTGGTGAAGAAGGTGAAGTCCATGCAGATG
TTCCATATGCCCATCACTTCAGCCATGCAAGGAGACCGGCTGGGCATCTGTGTCACCCAG
TTTGACCCCAAGCTGCTGGAGCGCGGGTTGGTGTGTGCCCCTGAGTCCCTGCACACTGTC
CACGCAGCCCTTATCTCTGTGGAAAAGATAACATATTTTCGGGGGCCCCTGCAGACCAAG
GCCAAGTTCCACATTACAGTGGGCCATGAGACAGTTATGGGCAAGTTGATGTTCTTCACC
CCTGCTCCAGATAACTTTGACCAGGAACCTATACTGGACTCCTTTGACTTCACTCAAGAA
TACCTCTTCCAGGAGCAGTACTTATGCAAGGATTTGGCATCAGCAGTGACAGACAATGAT
GAGGCCGACAAGAAGGCTGGCCAGGCCACAGAGGGCCATTGCCCTCGGCAGCAGTGGGCC
CTGGTGGAGTTTGAGAAGCCCGTCACCTGCCCTCGGCTATGCCTGGTGATCGGCTCCAGG
CTAGATGCGGACATTCATGCCAACACATGCCGGCTGGCCTTCCATGGCATCCTGCTCCAT
GGGCTGGAGGACAGGAACTATGCCGACAGCTTCCTGCCCAGGCTAAAGGTGTACAAGCTG
AAGCACAAGCATGGCCTTGTGGAGCGGGCAATGGATGACTACAGTGTGATCGGCCGCTCC
CTGTTCAAAAAGGAGACCAACATCCAGCTCTTTGTGGGGCTCAAGGTGCACCTGTCCACT
GGGGAACTGGGCATCATCGACAGTGCCTTTGGCCAGAGCGGCAAGTTCAAGATCCACATC
CCAGGTGGCCTCAGCCCTGAGTCCAAGAAGATCCTGACTCCCGCCCTCAAGAAGCGCGGC
CGGGCTGGCCGTGGGGAGGCCACCAGGCAGGAGGAGAGCACCGAGCGGACCGAGCCTGCT
CAGCACGTGGCGCTCAGCCTGTCTTTCAAGCGTTATGTCTTCGACACCCACAAGCGCATG
GTCCAGTCTCCC
//
gi|357434241|gb|JH378122.1|:subseq(402627,567281)	GeneWise	match	149997	417281	1260.73	+	.	gi|357434241|gb|JH378122.1|:subseq(402627,567281)-genewise-prediction-1
gi|357434241|gb|JH378122.1|:subseq(402627,567281)	GeneWise	cds	149997	150276	0.00	+	0	gi|357434241|gb|JH378122.1|:subseq(402627,567281)-genewise-prediction-1
gi|357434241|gb|JH378122.1|:subseq(402627,567281)	GeneWise	intron	150277	247184	0.00	+	.	gi|357434241|gb|JH378122.1|:subseq(402627,567281)-genewise-prediction-1
gi|357434241|gb|JH378122.1|:subseq(402627,567281)	GeneWise	cds	247185	247392	0.00	+	2	gi|357434241|gb|JH378122.1|:subseq(402627,567281)-genewise-prediction-1
gi|357434241|gb|JH378122.1|:subseq(402627,567281)	GeneWise	intron	247393	268362	0.00	+	.	gi|357434241|gb|JH378122.1|:subseq(402627,567281)-genewise-prediction-1
gi|357434241|gb|JH378122.1|:subseq(402627,567281)	GeneWise	cds	268363	268459	0.00	+	1	gi|357434241|gb|JH378122.1|:subseq(402627,567281)-genewise-prediction-1
gi|357434241|gb|JH378122.1|:subseq(402627,567281)	GeneWise	intron	268460	271006	0.00	+	.	gi|357434241|gb|JH378122.1|:subseq(402627,567281)-genewise-prediction-1
gi|357434241|gb|JH378122.1|:subseq(402627,567281)	GeneWise	cds	271007	271171	0.00	+	0	gi|357434241|gb|JH378122.1|:subseq(402627,567281)-genewise-prediction-1
gi|357434241|gb|JH378122.1|:subseq(402627,567281)	GeneWise	intron	271172	348575	0.00	+	.	gi|357434241|gb|JH378122.1|:subseq(402627,567281)-genewise-prediction-1
gi|357434241|gb|JH378122.1|:subseq(402627,567281)	GeneWise	cds	348576	349232	0.00	+	0	gi|357434241|gb|JH378122.1|:subseq(402627,567281)-genewise-prediction-1
gi|357434241|gb|JH378122.1|:subseq(402627,567281)	GeneWise	intron	349233	365761	0.00	+	.	gi|357434241|gb|JH378122.1|:subseq(402627,567281)-genewise-prediction-1
gi|357434241|gb|JH378122.1|:subseq(402627,567281)	GeneWise	cds	365762	365918	0.00	+	0	gi|357434241|gb|JH378122.1|:subseq(402627,567281)-genewise-prediction-1
gi|357434241|gb|JH378122.1|:subseq(402627,567281)	GeneWise	intron	365919	417093	0.00	+	.	gi|357434241|gb|JH378122.1|:subseq(402627,567281)-genewise-prediction-1
gi|357434241|gb|JH378122.1|:subseq(402627,567281)	GeneWise	cds	417094	417281	0.00	+	2	gi|357434241|gb|JH378122.1|:subseq(402627,567281)-genewise-prediction-1
//