Command line: [exonerate -m p2g --showtargetgff -q ./proteins/SPP00000038_1.0.fa -t ./subsequences/SPP00000038_1.0_1_genomic.fa_exonerate.fa]
Hostname: [luke]

C4 Alignment:
------------
         Query: SPP00000038_1.0 # Protein # Eukaryotic elongation factor (eEFSec) # Homo sapiens # Complete
        Target: gi|357434241|gb|JH378122.1|:subseq(402627,567281) Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00018, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 2864
   Query range: 13 -> 596
  Target range: 149999 -> 417281

     14 : GlyHisIleAspSerGlyLysThrAlaLeuAlaArgAlaLeuSerThrThrAlaSerT :     33
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          GlyHisIleAspSerGlyLysThrAlaLeuAlaArgAlaLeuSerThrThrAlaSerT
 150000 : GGCCACATCGATAGCGGCAAGACGGCGCTGGCGCGGGCCCTGAGCACCACAGCCTCTA : 150057

     34 : hrAlaAlaPheAspLysGlnProGlnSerArgGluArgGlyIleThrLeuAspLeuGl :     52
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          hrAlaAlaPheAspLysGlnProGlnSerArgGluArgGlyIleThrLeuAspLeuGl
 150058 : CTGCCGCCTTCGACAAGCAGCCGCAGAGCCGCGAGCGCGGCATCACGCTCGACCTGGG : 150114

     53 : yPheSerCysPheSerValProLeuProAlaArgLeuArgSerSerLeuProGluPhe :     71
          |||||||||||||||||||||||||||||||||||||||||||:!!||||||||||||
          yPheSerCysPheSerValProLeuProAlaArgLeuArgSerAlaLeuProGluPhe
 150115 : CTTCTCGTGCTTCTCGGTGCCGCTGCCCGCGCGCCTGCGATCCGCTCTGCCCGAGTTC : 150171

     72 : GlnAlaAlaProGluAlaGluProGluProGlyGluProLeuLeuGlnValThrLeuV :     91
          ||||||||||||||||||!!:|||||||||||||||||||||||||||||||||||||
          GlnAlaAlaProGluAlaAspProGluProGlyGluProLeuLeuGlnValThrLeuV
 150172 : CAGGCAGCGCCCGAAGCCGATCCCGAGCCCGGCGAGCCACTGCTTCAGGTCACGCTGG : 150231

     92 : alAspCysProGlyHisAlaSerLeuIleArgThrIleIleGly{G}  >>>> Targ :    106
          ||||||||||||||||||||||||||||||||||||||||||||{|}           
          alAspCysProGlyHisAlaSerLeuIleArgThrIleIleGly{G}++         
 150232 : TTGACTGTCCCGGGCACGCCTCCCTCATCCGGACCATCATCGGC{G}gt......... : 150279

    107 : et Intron 1 >>>>  {ly}AlaGlnIleIleAspLeuMetMetLeuValIleAsp :    118
          96908 bp          {||}||||||||||||||||||||||||||||||||||||
                          ++{ly}AlaGlnIleIleAspLeuMetMetLeuValIleAsp
 150280 : ................ag{GA}GCCCAGATCATTGATCTGATGATGCTGGTCATCGAT : 247220

    119 : ValThrLysGlyMetGlnThrGlnSerAlaGluCysLeuValIleGlyGlnIleAlaC :    138
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          ValThrLysGlyMetGlnThrGlnSerAlaGluCysLeuValIleGlyGlnIleAlaC
 247221 : GTGACCAAGGGGATGCAGACGCAGTCCGCGGAATGCCTTGTAATCGGCCAGATTGCCT : 247280

    139 : ysGlnLysLeuValValValLeuAsnLysIleAspLeuLeuProGluGlyLysArgGl :    157
          ||||||||||||||||||||||||||||||||||||||||| !!||||||!:!|||||
          ysGlnLysLeuValValValLeuAsnLysIleAspLeuLeuAlaGluGlyArgArgGl
 247281 : GCCAGAAGCTCGTCGTGGTGCTGAACAAAATAGACCTCTTAGCTGAAGGAAGGAGACA : 247337

    158 : nAlaAlaIleAspLysMetThrLysLysMetGlnLysThrLeuGluAsnThr{Ly}   :    175
          ||||.!!|||||||||||||||||||||||||||||||||||||||||||||{||}  
          nAlaThrIleAspLysMetThrLysLysMetGlnLysThrLeuGluAsnThr{Ly}++
 247338 : GGCAACAATTGATAAAATGACCAAGAAAATGCAGAAGACCCTAGAGAACACC{AA}gt : 247393

    176 : >>>> Target Intron 2 >>>>  {s}PheArgGlyAlaProIleIleProValA :    185
                   20970 bp          {|}||||||||||||||||||||||||||||
                                   ++{s}PheArgGlyAlaProIleIleProValA
 247394 : .........................ag{G}TTCCGAGGTGCACCGATTATACCCGTGG : 268391

    186 : laAlaLysProGlyGlyProGluAlaProGluThrGluAlaProGlnGlyIleProGl :    204
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          laAlaLysProGlyGlyProGluAlaProGluThrGluAlaProGlnGlyIleProGl
 268392 : CAGCCAAGCCGGGGGGACCAGAGGCCCCTGAAACTGAAGCTCCACAGGGCATTCCAGA : 268448

    205 : uLeuIleGlu  >>>> Target Intron 3 >>>>  LeuLeuThrSerGlnIleS :    214
          ||||||||||           2547 bp           |||||||||||||||||||
          uLeuIleGlu++                         ++LeuLeuThrSerGlnIleS
 268449 : ACTCATTGAGgt.........................agCTCCTGACGTCCCAGATTT : 271025

    215 : erIleProThrArgAspProSerGlyProPheLeuMetSerValAspHisCysPheSe :    233
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          erIleProThrArgAspProSerGlyProPheLeuMetSerValAspHisCysPheSe
 271026 : CCATCCCGACGAGAGACCCCTCGGGACCGTTCCTCATGTCTGTGGACCACTGTTTCTC : 271082

    234 : rIleLysGlyGlnGlyThrValMetThrGlyThrIleLeuSerGlySerIleSerLeu :    252
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          rIleLysGlyGlnGlyThrValMetThrGlyThrIleLeuSerGlySerIleSerLeu
 271083 : CATCAAAGGCCAAGGCACTGTGATGACAGGGACCATCCTCTCAGGCTCCATCAGCCTC : 271139

    253 : GlyAspSerValGluIleProAlaLeuLys  >>>> Target Intron 4 >>>>  :    263
          ||||||||||||||||||||||||||||||           77404 bp         
          GlyAspSerValGluIleProAlaLeuLys++                         +
 271140 : GGTGATAGTGTGGAGATTCCTGCCCTCAAGgt.........................a : 348574

    264 :  ValValLysLysValLysSerMetGlnMetPheHisMetProIleThrSerAlaMet :    281
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          +ValValLysLysValLysSerMetGlnMetPheHisMetProIleThrSerAlaMet
 348575 : gGTGGTGAAGAAGGTGAAGTCCATGCAGATGTTCCATATGCCCATCACTTCAGCCATG : 348630

    282 : GlnGlyAspArgLeuGlyIleCysValThrGlnPheAspProLysLeuLeuGluArgG :    301
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          GlnGlyAspArgLeuGlyIleCysValThrGlnPheAspProLysLeuLeuGluArgG
 348631 : CAAGGAGACCGGCTGGGCATCTGTGTCACCCAGTTTGACCCCAAGCTGCTGGAGCGCG : 348690

    302 : lyLeuValCysAlaProGluSerLeuHisThrValHisAlaAlaLeuIleSerValGl :    320
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          lyLeuValCysAlaProGluSerLeuHisThrValHisAlaAlaLeuIleSerValGl
 348691 : GGTTGGTGTGTGCCCCTGAGTCCCTGCACACTGTCCACGCAGCCCTTATCTCTGTGGA : 348747

    321 : uLysIleProTyrPheArgGlyProLeuGlnThrLysAlaLysPheHisIleThrVal :    339
          ||||||| !!||||||||||||||||||||||||||||||||||||||||||||||||
          uLysIleThrTyrPheArgGlyProLeuGlnThrLysAlaLysPheHisIleThrVal
 348748 : AAAGATAACATATTTTCGGGGGCCCCTGCAGACCAAGGCCAAGTTCCACATTACAGTG : 348804

    340 : GlyHisGluThrValMetGlyArgLeuMetPhePheSerProAlaProAspAsnPheA :    359
          |||||||||||||||||||||!:!||||||||||||!!!|||||||||||||||||||
          GlyHisGluThrValMetGlyLysLeuMetPhePheThrProAlaProAspAsnPheA
 348805 : GGCCATGAGACAGTTATGGGCAAGTTGATGTTCTTCACCCCTGCTCCAGATAACTTTG : 348864

    360 : spGlnGluProIleLeuAspSerPheAsnPheSerGlnGluTyrLeuPheGlnGluGl :    378
          ||||||||||||||||||||||||||:!!|||!!!|||||||||||||||||||||||
          spGlnGluProIleLeuAspSerPheAspPheThrGlnGluTyrLeuPheGlnGluGl
 348865 : ACCAGGAACCTATACTGGACTCCTTTGACTTCACTCAAGAATACCTCTTCCAGGAGCA : 348921

    379 : nTyrLeuSerLysAspLeuThrProAlaValThrAspAsnAspGluAlaAspLysLys :    397
          |||||||!!!|||||||||.!! !!|||||||||||||||||||||||||||||||||
          nTyrLeuCysLysAspLeuAlaSerAlaValThrAspAsnAspGluAlaAspLysLys
 348922 : GTACTTATGCAAGGATTTGGCATCAGCAGTGACAGACAATGATGAGGCCGACAAGAAG : 348978

    398 : AlaGlyGlnAlaThrGluGlyHisCysProArgGlnGlnTrpAlaLeuValGluPheG :    417
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          AlaGlyGlnAlaThrGluGlyHisCysProArgGlnGlnTrpAlaLeuValGluPheG
 348979 : GCTGGCCAGGCCACAGAGGGCCATTGCCCTCGGCAGCAGTGGGCCCTGGTGGAGTTTG : 349038

    418 : luLysProValThrCysProArgLeuCysLeuValIleGlySerArgLeuAspAlaAs :    436
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          luLysProValThrCysProArgLeuCysLeuValIleGlySerArgLeuAspAlaAs
 349039 : AGAAGCCCGTCACCTGCCCTCGGCTATGCCTGGTGATCGGCTCCAGGCTAGATGCGGA : 349095

    437 : pIleHisThrAsnThrCysArgLeuAlaPheHisGlyIleLeuLeuHisGlyLeuGlu :    455
          |||||||.!!||||||||||||||||||||||||||||||||||||||||||||||||
          pIleHisAlaAsnThrCysArgLeuAlaPheHisGlyIleLeuLeuHisGlyLeuGlu
 349096 : CATTCATGCCAACACATGCCGGCTGGCCTTCCATGGCATCCTGCTCCATGGGCTGGAG : 349152

    456 : AspArgAsnTyrAlaAspSerPheLeuProArgLeuLysValTyrLysLeuLysHisL :    475
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          AspArgAsnTyrAlaAspSerPheLeuProArgLeuLysValTyrLysLeuLysHisL
 349153 : GACAGGAACTATGCCGACAGCTTCCTGCCCAGGCTAAAGGTGTACAAGCTGAAGCACA : 349212

    476 : ysHisGlyLeuValGluArg  >>>> Target Intron 5 >>>>  AlaMetAsp :    484
          ||||||||||||||||||||           16529 bp          |||||||||
          ysHisGlyLeuValGluArg++                         ++AlaMetAsp
 349213 : AGCATGGCCTTGTGGAGCGGgt.........................agGCAATGGAT : 365768

    485 : AspTyrSerValIleGlyArgSerLeuPheLysLysGluThrAsnIleGlnLeuPheV :    504
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          AspTyrSerValIleGlyArgSerLeuPheLysLysGluThrAsnIleGlnLeuPheV
 365769 : GACTACAGTGTGATCGGCCGCTCCCTGTTCAAAAAGGAGACCAACATCCAGCTCTTTG : 365828

    505 : alGlyLeuLysValHisLeuSerThrGlyGluLeuGlyIleIleAspSerAlaPheGl :    523
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          alGlyLeuLysValHisLeuSerThrGlyGluLeuGlyIleIleAspSerAlaPheGl
 365829 : TGGGGCTCAAGGTGCACCTGTCCACTGGGGAACTGGGCATCATCGACAGTGCCTTTGG : 365885

    524 : yGlnSerGlyLysPheLysIleHisIlePro{G}  >>>> Target Intron 6 > :    534
          |||||||||||||||||||||||||||||||{|}           51175 bp     
          yGlnSerGlyLysPheLysIleHisIlePro{G}++                      
 365886 : CCAGAGCGGCAAGTTCAAGATCCACATCCCA{G}gt...................... : 365921

    535 : >>>  {ly}GlyLeuSerProGluSerLysLysIleLeuThrProAlaLeuLysLysA :    551
               {||}|||||||||||||||||||||||||||||||||||||||||||||||||
             ++{ly}GlyLeuSerProGluSerLysLysIleLeuThrProAlaLeuLysLysA
 365922 : ...ag{GT}GGCCTCAGCCCTGAGTCCAAGAAGATCCTGACTCCCGCCCTCAAGAAGC : 417144

    552 : rgAlaArgAlaGlyArgGlyGluAlaThrArgGlnGluGluSerAlaGluArgSerGl :    570
          ||!.!|||||||||||||||||||||||||||||||||||||||.!!||||||!!!||
          rgGlyArgAlaGlyArgGlyGluAlaThrArgGlnGluGluSerThrGluArgThrGl
 417145 : GCGGCCGGGCTGGCCGTGGGGAGGCCACCAGGCAGGAGGAGAGCACCGAGCGGACCGA : 417201

    571 : uProSerGlnHisValValLeuSerLeuThrPheLysArgTyrValPheAspThrHis :    589
          ||||:!!|||||||||!.!|||||||||:!!|||||||||||||||||||||||||||
          uProAlaGlnHisValAlaLeuSerLeuSerPheLysArgTyrValPheAspThrHis
 417202 : GCCTGCTCAGCACGTGGCGCTCAGCCTGTCTTTCAAGCGTTATGTCTTCGACACCCAC : 417258

    590 : LysArgMetValGlnSerPro :    596
          |||||||||||||||||||||
          LysArgMetValGlnSerPro
 417259 : AAGCGCATGGTCCAGTCTCCC : 417281

vulgar: SPP00000038_1.0 13 596 . gi|357434241|gb|JH378122.1|:subseq(402627,567281) 149999 417281 + 2864 M 92 276 S 0 1 5 0 2 I 0 96904 3 0 2 S 1 2 M 68 204 S 0 2 5 0 2 I 0 20966 3 0 2 S 1 1 M 32 96 5 0 2 I 0 2543 3 0 2 M 55 165 5 0 2 I 0 77400 3 0 2 M 219 657 5 0 2 I 0 16525 3 0 2 M 52 156 S 0 1 5 0 2 I 0 51171 3 0 2 S 1 2 M 62 186
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2012-12-04
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|357434241|gb|JH378122.1|:subseq(402627,567281)	exonerate:protein2genome:local	gene	150000	417281	2864	+	.	gene_id 1 ; sequence SPP00000038_1.0 ; gene_orientation +
gi|357434241|gb|JH378122.1|:subseq(402627,567281)	exonerate:protein2genome:local	cds	150000	150276	.	+	.	
gi|357434241|gb|JH378122.1|:subseq(402627,567281)	exonerate:protein2genome:local	exon	150000	150276	.	+	.	insertions 0 ; deletions 0
gi|357434241|gb|JH378122.1|:subseq(402627,567281)	exonerate:protein2genome:local	splice5	150277	150278	.	+	.	intron_id 1 ; splice_site "GT"
gi|357434241|gb|JH378122.1|:subseq(402627,567281)	exonerate:protein2genome:local	intron	150277	247184	.	+	.	intron_id 1
gi|357434241|gb|JH378122.1|:subseq(402627,567281)	exonerate:protein2genome:local	splice3	247183	247184	.	+	.	intron_id 0 ; splice_site "AG"
gi|357434241|gb|JH378122.1|:subseq(402627,567281)	exonerate:protein2genome:local	cds	247185	247392	.	+	.	
gi|357434241|gb|JH378122.1|:subseq(402627,567281)	exonerate:protein2genome:local	exon	247185	247392	.	+	.	insertions 0 ; deletions 0
gi|357434241|gb|JH378122.1|:subseq(402627,567281)	exonerate:protein2genome:local	splice5	247393	247394	.	+	.	intron_id 2 ; splice_site "GT"
gi|357434241|gb|JH378122.1|:subseq(402627,567281)	exonerate:protein2genome:local	intron	247393	268362	.	+	.	intron_id 2
gi|357434241|gb|JH378122.1|:subseq(402627,567281)	exonerate:protein2genome:local	splice3	268361	268362	.	+	.	intron_id 1 ; splice_site "AG"
gi|357434241|gb|JH378122.1|:subseq(402627,567281)	exonerate:protein2genome:local	cds	268363	268459	.	+	.	
gi|357434241|gb|JH378122.1|:subseq(402627,567281)	exonerate:protein2genome:local	exon	268363	268459	.	+	.	insertions 0 ; deletions 0
gi|357434241|gb|JH378122.1|:subseq(402627,567281)	exonerate:protein2genome:local	splice5	268460	268461	.	+	.	intron_id 3 ; splice_site "GT"
gi|357434241|gb|JH378122.1|:subseq(402627,567281)	exonerate:protein2genome:local	intron	268460	271006	.	+	.	intron_id 3
gi|357434241|gb|JH378122.1|:subseq(402627,567281)	exonerate:protein2genome:local	splice3	271005	271006	.	+	.	intron_id 2 ; splice_site "AG"
gi|357434241|gb|JH378122.1|:subseq(402627,567281)	exonerate:protein2genome:local	cds	271007	271171	.	+	.	
gi|357434241|gb|JH378122.1|:subseq(402627,567281)	exonerate:protein2genome:local	exon	271007	271171	.	+	.	insertions 0 ; deletions 0
gi|357434241|gb|JH378122.1|:subseq(402627,567281)	exonerate:protein2genome:local	splice5	271172	271173	.	+	.	intron_id 4 ; splice_site "GT"
gi|357434241|gb|JH378122.1|:subseq(402627,567281)	exonerate:protein2genome:local	intron	271172	348575	.	+	.	intron_id 4
gi|357434241|gb|JH378122.1|:subseq(402627,567281)	exonerate:protein2genome:local	splice3	348574	348575	.	+	.	intron_id 3 ; splice_site "AG"
gi|357434241|gb|JH378122.1|:subseq(402627,567281)	exonerate:protein2genome:local	cds	348576	349232	.	+	.	
gi|357434241|gb|JH378122.1|:subseq(402627,567281)	exonerate:protein2genome:local	exon	348576	349232	.	+	.	insertions 0 ; deletions 0
gi|357434241|gb|JH378122.1|:subseq(402627,567281)	exonerate:protein2genome:local	splice5	349233	349234	.	+	.	intron_id 5 ; splice_site "GT"
gi|357434241|gb|JH378122.1|:subseq(402627,567281)	exonerate:protein2genome:local	intron	349233	365761	.	+	.	intron_id 5
gi|357434241|gb|JH378122.1|:subseq(402627,567281)	exonerate:protein2genome:local	splice3	365760	365761	.	+	.	intron_id 4 ; splice_site "AG"
gi|357434241|gb|JH378122.1|:subseq(402627,567281)	exonerate:protein2genome:local	cds	365762	365918	.	+	.	
gi|357434241|gb|JH378122.1|:subseq(402627,567281)	exonerate:protein2genome:local	exon	365762	365918	.	+	.	insertions 0 ; deletions 0
gi|357434241|gb|JH378122.1|:subseq(402627,567281)	exonerate:protein2genome:local	splice5	365919	365920	.	+	.	intron_id 6 ; splice_site "GT"
gi|357434241|gb|JH378122.1|:subseq(402627,567281)	exonerate:protein2genome:local	intron	365919	417093	.	+	.	intron_id 6
gi|357434241|gb|JH378122.1|:subseq(402627,567281)	exonerate:protein2genome:local	splice3	417092	417093	.	+	.	intron_id 5 ; splice_site "AG"
gi|357434241|gb|JH378122.1|:subseq(402627,567281)	exonerate:protein2genome:local	cds	417094	417281	.	+	.	
gi|357434241|gb|JH378122.1|:subseq(402627,567281)	exonerate:protein2genome:local	exon	417094	417281	.	+	.	insertions 0 ; deletions 0
gi|357434241|gb|JH378122.1|:subseq(402627,567281)	exonerate:protein2genome:local	similarity	150000	417281	2864	+	.	alignment_id 1 ; Query SPP00000038_1.0 ; Align 150000 14 276 ; Align 247187 107 204 ; Align 268364 176 96 ; Align 271007 208 165 ; Align 348576 263 657 ; Align 365762 482 156 ; Align 417096 535 186
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis