TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000038_1.0 # Protein # Eukaryotic elongation factor
(eEFSec) # Homo sapiens # Complete
         (596 letters)

Database: /cursos/BI/genomes/project_2013/Saimiri_boliviensis/genome.f
a 
           2685 sequences; 2,608,572,064 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|JH378122.1| Saimiri boliviensis boliviensis unplaced genomic ...   436   e-120
gb|JH378154.1| Saimiri boliviensis boliviensis unplaced genomic ...    69   1e-09
gb|JH378206.1| Saimiri boliviensis boliviensis unplaced genomic ...    66   5e-09
gb|JH378111.1| Saimiri boliviensis boliviensis unplaced genomic ...    66   5e-09
gb|JH378113.1| Saimiri boliviensis boliviensis unplaced genomic ...    66   7e-09
gb|JH378116.1| Saimiri boliviensis boliviensis unplaced genomic ...    59   6e-07
gb|JH378115.1| Saimiri boliviensis boliviensis unplaced genomic ...    51   2e-04
gb|JH378156.1| Saimiri boliviensis boliviensis unplaced genomic ...    51   2e-04

>gb|JH378122.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00018,
              whole genome shotgun sequence
          Length = 30262601

 Score =  436 bits (1121), Expect = e-120
 Identities = 210/220 (95%), Positives = 215/220 (97%)
 Frame = +3

Query: 262    KVVKKVKSMQMFHMPITSAMQGDRLGICVTQFDPKLLERGLVCAPESLHTVHAALISVEK 321
              +VVKKVKSMQMFHMPITSAMQGDRLGICVTQFDPKLLERGLVCAPESLHTVHAALISVEK
Sbjct: 751200 QVVKKVKSMQMFHMPITSAMQGDRLGICVTQFDPKLLERGLVCAPESLHTVHAALISVEK 751379

Query: 322    IPYFRGPLQTKAKFHITVGHETVMGRLMFFSPAPDNFDQEPILDSFNFSQEYLFQEQYLS 381
              I YFRGPLQTKAKFHITVGHETVMG+LMFF+PAPDNFDQEPILDSF+F+QEYLFQEQYL 
Sbjct: 751380 ITYFRGPLQTKAKFHITVGHETVMGKLMFFTPAPDNFDQEPILDSFDFTQEYLFQEQYLC 751559

Query: 382    KDLTPAVTDNDEADKKAGQATEGHCPRQQWALVEFEKPVTCPRLCLVIGSRLDADIHTNT 441
              KDL  AVTDNDEADKKAGQATEGHCPRQQWALVEFEKPVTCPRLCLVIGSRLDADIH NT
Sbjct: 751560 KDLASAVTDNDEADKKAGQATEGHCPRQQWALVEFEKPVTCPRLCLVIGSRLDADIHANT 751739

Query: 442    CRLAFHGILLHGLEDRNYADSFLPRLKVYKLKHKHGLVER 481
              CRLAFHGILLHGLEDRNYADSFLPRLKVYKLKHKHGLVER
Sbjct: 751740 CRLAFHGILLHGLEDRNYADSFLPRLKVYKLKHKHGLVER 751859



 Score =  133 bits (334), Expect = 3e-29
 Identities = 68/77 (88%), Positives = 72/77 (93%)
 Frame = +2

Query: 99     LIRTIIGGAQIIDLMMLVIDVTKGMQTQSAECLVIGQIACQKLVVVLNKIDLLPEGKRQA 158
              +  ++I GAQIIDLMMLVIDVTKGMQTQSAECLVIGQIACQKLVVVLNKIDLL EG+RQA
Sbjct: 649790 IFSSLIPGAQIIDLMMLVIDVTKGMQTQSAECLVIGQIACQKLVVVLNKIDLLAEGRRQA 649969

Query: 159    AIDKMTKKMQKTLENTK 175
               IDKMTKKMQKTLENTK
Sbjct: 649970 TIDKMTKKMQKTLENTK 650020



 Score =  117 bits (294), Expect = 1e-24
 Identities = 57/63 (90%), Positives = 60/63 (95%)
 Frame = +3

Query: 534    GGLSPESKKILTPALKKRARAGRGEATRQEESAERSEPSQHVVLSLTFKRYVFDTHKRMV 593
              GGLSPESKKILTPALKKR RAGRGEATRQEES ER+EP+QHV LSL+FKRYVFDTHKRMV
Sbjct: 819720 GGLSPESKKILTPALKKRGRAGRGEATRQEESTERTEPAQHVALSLSFKRYVFDTHKRMV 819899

Query: 594    QSP 596
              QSP
Sbjct: 819900 QSP 819908



 Score =  113 bits (282), Expect = 4e-23
 Identities = 57/63 (90%), Positives = 59/63 (93%)
 Frame = +2

Query: 208    LLTSQISIPTRDPSGPFLMSVDHCFSIKGQGTVMTGTILSGSISLGDSVEIPALKVVKKV 267
              LLTSQISIPTRDPSGPFLMSVDHCFSIKGQGTVMTGTILSGSISLGDSVEIPALKV   +
Sbjct: 673634 LLTSQISIPTRDPSGPFLMSVDHCFSIKGQGTVMTGTILSGSISLGDSVEIPALKVSLTL 673813

Query: 268    KSM 270
               S+
Sbjct: 673814 SSL 673822



 Score =  109 bits (273), Expect = 4e-22
 Identities = 55/61 (90%), Positives = 57/61 (93%)
 Frame = +2

Query: 477    GLVERAMDDYSVIGRSLFKKETNIQLFVGLKVHLSTGELGIIDSAFGQSGKFKIHIPGGL 536
              G+  +AMDDYSVIGRSLFKKETNIQLFVGLKVHLSTGELGIIDSAFGQSGKFKIHIPG  
Sbjct: 768374 GVWGQAMDDYSVIGRSLFKKETNIQLFVGLKVHLSTGELGIIDSAFGQSGKFKIHIPGKC 768553

Query: 537    S 537
              S
Sbjct: 768554 S 768556



 Score =  108 bits (271), Expect = 7e-22
 Identities = 58/93 (62%), Positives = 59/93 (63%)
 Frame = +3

Query: 14     GHIDSGKXXXXXXXXXXXXXXXFDKQPQSRERGITLDLGFSCFSVPLPARLRSSXXXXXX 73
              GHIDSGK               FDKQPQSRERGITLDLGFSCFSVPLPARLRS+      
Sbjct: 552627 GHIDSGKTALARALSTTASTAAFDKQPQSRERGITLDLGFSCFSVPLPARLRSALPEFQA 552806

Query: 74     XXXXXXXXXXXXXQVTLVDCPGHASLIRTIIGG 106
                           QVTLVDCPGHASLIRTIIGG
Sbjct: 552807 APEADPEPGEPLLQVTLVDCPGHASLIRTIIGG 552905


>gb|JH378154.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00050,
               whole genome shotgun sequence
          Length = 16452072

 Score = 68.6 bits (166), Expect = 1e-09
 Identities = 62/233 (26%), Positives = 107/233 (45%), Gaps = 23/233 (9%)
 Frame = -2

Query: 88      VTLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGM-QTQSAECLVIGQIACQKLVVVL- 145
               V+ VDCPGH  L+ T++ GA ++D  +L+I   +   Q Q++E L   +I   K +++L 
Sbjct: 2406959 VSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAIEIMKLKHILILQ 2406780

Query: 146     NKIDLLPEGKRQAAIDKMTKKMQKTLENTKFRGAPIIPVXXXXXXXXXXXXXXXXXIPEL 205
               NKIDL+ E + +   +++   +Q T+      GAPIIP+                 I  +
Sbjct: 2406779 NKIDLVKESQAKEQYEQILAFVQGTVA----EGAPIIPI----------SAQLKYNIEVV 2406642

Query: 206     IELLTSQISIPTRDPSGPFLMSVDHCFSIKG--------QGTVMTGTILSGSISLGDSVE 257
                E +  +I +P RD +    + V   F +          +G V  G+IL G + +G  +E
Sbjct: 2406641 CEYIVKKIPVPPRDFTSEPRLIVIRSFDVNKPGCEVDDLKGGVAGGSILKGVLKVGQEIE 2406462

Query: 258     I-PAL------------KVVKKVKSMQMFHMPITSAMQGDRLGICVTQFDPKL 297
               + P +             +  K+ S+   H  +  A  G  +G+  T+ DP L
Sbjct: 2406461 VRPGIVSKDSEGKLMCKPIFSKIVSLFAEHNDLQYAAPGGLIGV-GTKIDPTL 2406306


>gb|JH378206.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00102,
               whole genome shotgun sequence
          Length = 8035806

 Score = 66.2 bits (160), Expect = 5e-09
 Identities = 64/290 (22%), Positives = 110/290 (37%), Gaps = 25/290 (8%)
 Frame = -1

Query: 37      DKQPQSRERGITLDLGFSCFSVPLPARLRSSXXXXXXXXXXXXXXXXXXXQVTLVDCPGH 96
               DK    RERGIT+D+    F                               VT++D PGH
Sbjct: 6495267 DKLKAERERGITIDISLWKFETS-------------------------KYYVTIIDAPGH 6495163

Query: 97      ASLIRTIIGGAQIIDLMMLVI---------DVTKGMQTQSAECLVIGQIACQKLVVVLNK 147
                  I+ +I G    D  +L++          ++K  QT+    L+   +  ++L+V +NK
Sbjct: 6495162 RDFIKNMITGTSQADCAVLIVAAGVGEFEAGISKNGQTRE-HALLAYTLGVKQLIVGVNK 6494986

Query: 148     IDLLPEGKRQAAIDKMTKKMQKTLENTKFRGAPI--IPVXXXXXXXXXXXXXXXXXIP-- 203
               +D       Q   +++ K++   ++   +    +  +P+                     
Sbjct: 6494985 MDSTEPPYSQKRYEEIVKEVSTYIKKIGYNPDTVAFVPISGWNGDNMLEPSANMPWFKGW 6494806

Query: 204     ------------ELIELLTSQISIPTRDPSGPFLMSVDHCFSIKGQGTVMTGTILSGSIS 251
                            L+E L   I  PTR    P  + +   + I G GTV  G + +G + 
Sbjct: 6494805 KVTRKDGNASGTTLLEALDC-ILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLK 6494629

Query: 252     LGDSVEIPALKVVKKVKSMQMFHMPITSAMQGDRLGICVTQFDPKLLERG 301
                G  V    + V  +VKS++M H  ++ A+ GD +G  V     K + RG
Sbjct: 6494628 PGMVVTFAPVNVTTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDVRRG 6494479


>gb|JH378111.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00007,
                whole genome shotgun sequence
          Length = 46157118

 Score = 66.2 bits (160), Expect = 5e-09
 Identities = 61/233 (26%), Positives = 106/233 (45%), Gaps = 23/233 (9%)
 Frame = +2

Query: 88       VTLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGM-QTQSAECLVIGQIACQKLVVVL- 145
                V+ VDCPGH  L+ T++ GA ++D  +L+I   +   Q Q++E L   +I   K  ++L 
Sbjct: 11680574 VSFVDCPGHNILMATVLSGAVVMDAALLLIAGNESCPQPQTSEHLAAIEIMKLKHFLILQ 11680753

Query: 146      NKIDLLPEGKRQAAIDKMTKKMQKTLENTKFRGAPIIPVXXXXXXXXXXXXXXXXXIPEL 205
                NKIDL+ E + +   +++   +Q T+      GAPIIP+                 I  +
Sbjct: 11680754 NKIDLVKENQAKEQYEQILVFVQGTVA----EGAPIIPI----------SVQLKYNIEVV 11680891

Query: 206      IELLTSQISIPTRDPSGPFLMSVDHCFSIKG--------QGTVMTGTILSGSISLGDSVE 257
                 E +  +I +P RD +    + V   F +          +G    G+IL G +++G  +E
Sbjct: 11680892 CEYIVKKIPVPPRDFTSEPCLIVIRSFDVNRPGCEVGDLKGVEAGGSILKGVLNVGQEIE 11681071

Query: 258      I-PAL------------KVVKKVKSMQMFHMPITSAMQGDRLGICVTQFDPKL 297
                + P +             +  K+ S+   H  +  A  G  +G+  T+ DP L
Sbjct: 11681072 VRPGIVSKDSEGKLTCKPIFSKIVSLFAEHNDLQYAAPGGLIGV-GTKIDPAL 11681227


>gb|JH378113.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00009,
                whole genome shotgun sequence
          Length = 44311105

 Score = 65.9 bits (159), Expect = 7e-09
 Identities = 65/299 (21%), Positives = 111/299 (37%), Gaps = 25/299 (8%)
 Frame = -1

Query: 37       DKQPQSRERGITLDLGFSCFSVPLPARLRSSXXXXXXXXXXXXXXXXXXXQVTLVDCPGH 96
                DK     ERGIT+D+    F                               V ++D PGH
Sbjct: 44052841 DKLKAEHERGITIDISLWKFETS-------------------------KYYVAIIDAPGH 44052737

Query: 97       ASLIRTIIGGAQIIDLMMLVI---------DVTKGMQTQSAECLVIGQIACQKLVVVLNK 147
                   IR +I G    D  +L++          ++K  QT+    L+   +  ++L+V +NK
Sbjct: 44052736 RDFIRNMITGTSQADCAVLIVAAGVGEFETGISKNGQTRE-HALLAYTLGVKQLIVGVNK 44052560

Query: 148      IDLLPEGKRQAAIDKMTKKMQKTLENTKFRGAPI--IPVXXXXXXXXXXXXXXXXXIP-- 203
                +D       Q   +++ K++   ++   +    +  +P+                     
Sbjct: 44052559 MDSTEPPYSQKRYEEIVKEVSTYIKKICYNPDTVAFVPISGWNGDNMLEPSANMPWFKGW 44052380

Query: 204      ------------ELIELLTSQISIPTRDPSGPFLMSVDHCFSIKGQGTVMTGTILSGSIS 251
                             L+E L   I  PTR    P  + +   + I G GTV  G + +G + 
Sbjct: 44052379 KVTRKDGNASGTTLLEALDC-ILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLK 44052203

Query: 252      LGDSVEIPALKVVKKVKSMQMFHMPITSAMQGDRLGICVTQFDPKLLERGLVCAPESLH 310
                 G  V   ++ V  +VKS++M H  ++ A+ GD +G  V     K + RG V      H
Sbjct: 44052202 PGMVVTFASVNVTTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDVRRGNVAGDSKNH 44052026


>gb|JH378116.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00012,
               whole genome shotgun sequence
          Length = 39782659

 Score = 59.3 bits (142), Expect = 6e-07
 Identities = 60/268 (22%), Positives = 106/268 (39%), Gaps = 16/268 (5%)
 Frame = -2

Query: 43      RERGITLDLGFSCFSVPLPARLRSSXXXXXXXXXXXXXXXXXXXQVTLVDCPGHASLIRT 102
               +ERG+T+D+G + F                               +TL+D PGH   I  
Sbjct: 3612507 KERGVTMDVGVTKFETTTKV-------------------------ITLMDAPGHKDFIPN 3612403

Query: 103     IIGGAQIIDLMMLVIDVTK---------GMQTQSAECLVIGQIACQKLVVVLNKIDLLPE 153
               +I GA   D+ +LV+D ++         G QT+    L++  +   +L V +NK+D +  
Sbjct: 3612402 MITGAAQADVAVLVVDASRREFEAGFETGGQTRE-RGLLVRSLGVTQLAVAVNKMDQV-- 3612232

Query: 154     GKRQAAIDKMTKKMQKTLENTKFRGAPIIPVXXXXXXXXXXXXXXX-XXIPE------LI 206
                 +Q    ++T K+   L+   F+ + +  +                  + +      L+
Sbjct: 3612231 NWQQERFQEITGKLGHFLKQAVFKESDVAFISTSGLSGENLITRSQ*SELTKWYKGLCLL 3612052

Query: 207     ELLTSQISIPTRDPSGPFLMSVDHCFSIKGQGTVMTGTILSGSISLGDSVEIPALKVVKK 266
               E + S    P R    PF + V   F  +G G  +TG I +G I  GD +    L     
Sbjct: 3612051 EQIDS-FKPPQRSIDKPFRLCVSDVFKDQGSGFCVTGKIEAGYIQTGDRLLAMPLNETCT 3611875

Query: 267     VKSMQMFHMPITSAMQGDRLGICVTQFD 294
               +K + +   P+  A  GD + + +   D
Sbjct: 3611874 IKGITLHDEPVDWAAAGDHVSLTLVGMD 3611791


>gb|JH378115.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00011,
                whole genome shotgun sequence
          Length = 43820709

 Score = 51.2 bits (121), Expect = 2e-04
 Identities = 52/236 (22%), Positives = 94/236 (39%), Gaps = 25/236 (10%)
 Frame = +1

Query: 93       CPGHASLIRTIIGGAQIIDLMMLVI---------DVTKGMQTQSAECLVIGQIACQKLVV 143
                CPG   L   +I G    D  +L++          ++K  QT+    L+   +  ++L+V
Sbjct: 29529001 CPGTQRLH*NMITGTSQADCAVLIVAAGVGEFEAGISKNGQTRE-HALLAYTLGVKQLIV 29529177

Query: 144      VLNKIDLLPEGKRQAAIDKMTKKMQKTLENTKFRGAPI--IPVXXXXXXXXXXXXXXXXX 201
                 +NK+D       Q   +++ K++   ++   +    +  +P+                 
Sbjct: 29529178 GVNKMDSTEPPYSQKRYEEIVKEVSTYIKKIGYNPDTVAFVPISGWNGDNMLEPSANMP* 29529357

Query: 202      IP--------------ELIELLTSQISIPTRDPSGPFLMSVDHCFSIKGQGTVMTGTILS 247
                                 L+E L   I  PTR    P  + +   + I G GTV  G + +
Sbjct: 29529358 FKGWKVTRKDGNASGTTLLEALDC-ILPPTRPTDKPLRLPLQDVYKIGGVGTVPVGRVGT 29529534

Query: 248      GSISLGDSVEIPALKVVKKVKSMQMFHMPITSAMQGDRLGICVTQFDPKLLERGLV 303
                G +  G  V    + V  +VKS++M H  ++ A+ GD +G+ V     K + RG V
Sbjct: 29529535 GVLKPGMVVTFAPVNVTTEVKSVEMHHEALSEALPGDSVGLNVKNVSVKDVRRGNV 29529702


>gb|JH378156.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00052,
                whole genome shotgun sequence
          Length = 16356641

 Score = 50.8 bits (120), Expect = 2e-04
 Identities = 28/91 (30%), Positives = 44/91 (48%)
 Frame = -3

Query: 214      SIPTRDPSGPFLMSVDHCFSIKGQGTVMTGTILSGSISLGDSVEIPALKVVKKVKSMQMF 273
                S+P      P   +  H  S+ G GTV  G + +G +  G  V    + +  +VKS++M 
Sbjct: 15591819 SVPRSPAQHPLSPASPHSPSLAGIGTVPVGRVETGILRPGMVVTFAPVNITTEVKSVEMH 15591640

Query: 274      HMPITSAMQGDRLGICVTQFDPKLLERGLVC 304
                H  ++ A+ GD +G  V     K + RG VC
Sbjct: 15591639 HEALSEALPGDNVGFNVKNVSVKDIRRGNVC 15591547


  Database: /cursos/BI/genomes/project_2013/Saimiri_boliviensis/genome
  .fa
    Posted date:  Oct 24, 2012  8:25 PM
  Number of letters in database: 2,608,572,064
  Number of sequences in database:  2685
  
Lambda     K      H
   0.321    0.137    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,569,092,066
Number of Sequences: 2685
Number of extensions: 22312540
Number of successful extensions: 91749
Number of sequences better than 1.0e-03: 8
Number of HSP's better than  0.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 84512
Number of HSP's gapped (non-prelim): 28973
length of query: 596
length of database: 869,524,021
effective HSP length: 137
effective length of query: 459
effective length of database: 869,156,176
effective search space: 398942684784
effective search space used: 398942684784
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 114 (48.5 bits)