BLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPS00000022_1.0 # SECIS # Thioredoxin reductase 1 (TR1) # Homo
sapiens # Complete # Forward
         (96 letters)

Database: /cursos/BI/genomes/project_2013/Saimiri_boliviensis/genome.f
a 
           2685 sequences; 2,608,572,064 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|JH378139.1| Saimiri boliviensis boliviensis unplaced genomic ...   143   2e-32

>gb|JH378139.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00035,
                whole genome shotgun sequence
          Length = 19873202

 Score =  143 bits (72), Expect = 2e-32
 Identities = 90/96 (93%)
 Strand = Plus / Plus

                                                                            
Query: 1        atttggcagggcatcgaagggatgcatccatgaagtcaccagtctcaagcccatgtggta 60
                |||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 10561722 atttggcagggcattgtaaggatgcatccatgaagtcaccagtctcaagcccatgtggta 10561781

                                                    
Query: 61       ggcggtgatggaacaactgtcaaatcagttttagca 96
                | | ||||||||||||||||||||||||||| ||||
Sbjct: 10561782 gacagtgatggaacaactgtcaaatcagtttcagca 10561817


  Database: /cursos/BI/genomes/project_2013/Saimiri_boliviensis/genome
  .fa
    Posted date:  Oct 24, 2012  8:25 PM
  Number of letters in database: 2,608,572,064
  Number of sequences in database:  2685
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 93,966
Number of Sequences: 2685
Number of extensions: 93966
Number of successful extensions: 24
Number of sequences better than 1.0e-03: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 23
Number of HSP's gapped (non-prelim): 1
length of query: 96
length of database: 2,608,572,064
effective HSP length: 19
effective length of query: 77
effective length of database: 2,608,521,049
effective search space: 200856120773
effective search space used: 200856120773
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 24 (48.1 bits)