BLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPS00000021_1.0 # SECIS # Selenophosphate synthetase 2 (SPS2) #
Homo sapiens # Complete # Reverse
         (98 letters)

Database: /cursos/BI/genomes/project_2013/Saimiri_boliviensis/genome.f
a 
           2685 sequences; 2,608,572,064 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|JH378141.1| Saimiri boliviensis boliviensis unplaced genomic ...   170   7e-41
gb|JH378112.1| Saimiri boliviensis boliviensis unplaced genomic ...   157   1e-36
gb|JH378160.1| Saimiri boliviensis boliviensis unplaced genomic ...   141   6e-32
gb|JH378155.1| Saimiri boliviensis boliviensis unplaced genomic ...   115   4e-24
gb|JH378276.1| Saimiri boliviensis boliviensis unplaced genomic ...    92   5e-17

>gb|JH378141.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00037,
                whole genome shotgun sequence
          Length = 19344684

 Score =  170 bits (86), Expect = 7e-41
 Identities = 95/98 (96%)
 Strand = Plus / Minus

                                                                            
Query: 1        aggcctgggctctgaggcttgctctgcctctcccagtccttaatggggtttagagggaga 60
                ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 10048709 aggcctgggctctgaggcttgctctgcctctcccagtccttaatggggtttggagggaga 10048650

                                                      
Query: 61       gacgtcattaacagagaccaagtcagatggttgcaggt 98
                |||||||||||||||||||||| || ||||||||||||
Sbjct: 10048649 gacgtcattaacagagaccaagccacatggttgcaggt 10048612


>gb|JH378112.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00008,
                whole genome shotgun sequence
          Length = 45331107

 Score =  157 bits (79), Expect = 1e-36
 Identities = 91/95 (95%)
 Strand = Plus / Plus

                                                                            
Query: 4        cctgggctctgaggcttgctctgcctctcccagtccttaatggggtttagagggagagac 63
                |||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |||
Sbjct: 26372966 cctgggctctgaggcttgctctgcctctcccagtccttaatggggtttagtgagagcgac 26373025

                                                   
Query: 64       gtcattaacagagaccaagtcagatggttgcaggt 98
                ||||||||||||||||||| |||||||||||||||
Sbjct: 26373026 gtcattaacagagaccaagccagatggttgcaggt 26373060


>gb|JH378160.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00056,
               whole genome shotgun sequence
          Length = 15574059

 Score =  141 bits (71), Expect = 6e-32
 Identities = 89/95 (93%)
 Strand = Plus / Minus

                                                                           
Query: 1       aggcctgggctctgaggcttgctctgcctctcccagtccttaatggggtttagagggaga 60
               |||||||||| |||||||||||||||||||||||||||||||||||  ||||||||||||
Sbjct: 5903463 aggcctgggccctgaggcttgctctgcctctcccagtccttaatggattttagagggaga 5903404

                                                  
Query: 61      gacgtcattaacagagaccaagtcagatggttgca 95
               ||| |||||||||||||||||  ||||||||||||
Sbjct: 5903403 gacatcattaacagagaccaaaccagatggttgca 5903369


>gb|JH378155.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00051,
               whole genome shotgun sequence
          Length = 16417988

 Score =  115 bits (58), Expect = 4e-24
 Identities = 88/98 (89%)
 Strand = Plus / Plus

                                                                           
Query: 1       aggcctgggctctgaggcttgctctgcctctcccagtccttaatggggtttagagggaga 60
               |||||||||||||  ||||  |||||||||| ||||||||| ||||| |  |||||||||
Sbjct: 1345962 aggcctgggctctagggctctctctgcctcttccagtccttgatgggctgcagagggaga 1346021

                                                     
Query: 61      gacgtcattaacagagaccaagtcagatggttgcaggt 98
               ||||| ||||||||||||||||||||||||||||||||
Sbjct: 1346022 gacgtaattaacagagaccaagtcagatggttgcaggt 1346059


>gb|JH378276.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00172,
               whole genome shotgun sequence
          Length = 3282555

 Score = 91.7 bits (46), Expect = 5e-17
 Identities = 76/86 (88%)
 Strand = Plus / Plus

                                                                           
Query: 1       aggcctgggctctgaggcttgctctgcctctcccagtccttaatggggtttagagggaga 60
               ||||| ||||||| |||||  | |||||||| |||||||||||||| ||||| |||||||
Sbjct: 2172932 aggccggggctctaaggctctccctgcctcttccagtccttaatggagtttaaagggaga 2172991

                                         
Query: 61      gacgtcattaacagagaccaagtcag 86
               ||| ||||||||||||||||| ||||
Sbjct: 2172992 gacatcattaacagagaccaactcag 2173017


  Database: /cursos/BI/genomes/project_2013/Saimiri_boliviensis/genome
  .fa
    Posted date:  Oct 24, 2012  8:25 PM
  Number of letters in database: 2,608,572,064
  Number of sequences in database:  2685
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 170,231
Number of Sequences: 2685
Number of extensions: 170231
Number of successful extensions: 443
Number of sequences better than 1.0e-03: 5
Number of HSP's better than  0.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 435
Number of HSP's gapped (non-prelim): 8
length of query: 98
length of database: 2,608,572,064
effective HSP length: 19
effective length of query: 79
effective length of database: 2,608,521,049
effective search space: 206073162871
effective search space used: 206073162871
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 24 (48.1 bits)