BLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPS00000020_1.0 # SECIS # Selenoprotein W1 (SelW1) # Homo
sapiens # Complete # Forward
         (78 letters)

Database: /cursos/BI/genomes/project_2013/Saimiri_boliviensis/genome.f
a 
           2685 sequences; 2,608,572,064 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|JH378198.1| Saimiri boliviensis boliviensis unplaced genomic ...    80   1e-13
gb|JH378232.1| Saimiri boliviensis boliviensis unplaced genomic ...    76   2e-12

>gb|JH378198.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00094,
               whole genome shotgun sequence
          Length = 8833755

 Score = 79.8 bits (40), Expect = 1e-13
 Identities = 61/68 (89%)
 Strand = Plus / Plus

                                                                           
Query: 10      cctctcagcagacgcttcatgataggaaggactgaaaagtcttgtggacacctggtcttt 69
               |||||||||||||||||||||| |||||||||||||| |||| |||  | |||| |||||
Sbjct: 6458828 cctctcagcagacgcttcatgacaggaaggactgaaatgtctcgtgttcgcctgatcttt 6458887

                       
Query: 70      ccctgatg 77
               ||||||||
Sbjct: 6458888 ccctgatg 6458895


>gb|JH378232.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00128,
               whole genome shotgun sequence
          Length = 6141190

 Score = 75.8 bits (38), Expect = 2e-12
 Identities = 65/74 (87%)
 Strand = Plus / Plus

                                                                           
Query: 4       ccagcccctctcagcagacgcttcatgataggaaggactgaaaagtcttgtggacacctg 63
               ||||||||||||||||||||||||||||  ||||||| ||||| | || |||||| ||||
Sbjct: 3031002 ccagcccctctcagcagacgcttcatgacgggaaggagtgaaatgcctcgtggacgcctg 3031061

                             
Query: 64      gtctttccctgatg 77
               ||| ||||| ||||
Sbjct: 3031062 gtccttccccgatg 3031075


  Database: /cursos/BI/genomes/project_2013/Saimiri_boliviensis/genome
  .fa
    Posted date:  Oct 24, 2012  8:25 PM
  Number of letters in database: 2,608,572,064
  Number of sequences in database:  2685
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 109,705
Number of Sequences: 2685
Number of extensions: 109705
Number of successful extensions: 41
Number of sequences better than 1.0e-03: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 39
Number of HSP's gapped (non-prelim): 2
length of query: 78
length of database: 2,608,572,064
effective HSP length: 19
effective length of query: 59
effective length of database: 2,608,521,049
effective search space: 153902741891
effective search space used: 153902741891
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 24 (48.1 bits)