BLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPS00000016_1.0 # SECIS # Methionine-R-sufoxide reductase 1
(SelR1) # Homo sapiens # Complete # Reverse
         (96 letters)

Database: /cursos/BI/genomes/project_2013/Saimiri_boliviensis/genome.f
a 
           2685 sequences; 2,608,572,064 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|JH378134.1| Saimiri boliviensis boliviensis unplaced genomic ...   123   1e-26
gb|JH378281.1| Saimiri boliviensis boliviensis unplaced genomic ...    58   7e-07

>gb|JH378134.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00030,
                whole genome shotgun sequence
          Length = 22521080

 Score =  123 bits (62), Expect = 1e-26
 Identities = 71/74 (95%)
 Strand = Plus / Minus

                                                                            
Query: 1        ttcccagcaggtcacagaccatccccactctggctggcctggaagggtttgaccagagcg 60
                ||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |
Sbjct: 16042758 ttcccagcaggtcacggaccatccccaccctggctggcctggaagggtttgaccagagtg 16042699

                              
Query: 61       gatcatgcagtgac 74
                ||||||||||||||
Sbjct: 16042698 gatcatgcagtgac 16042685


>gb|JH378281.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00177,
              whole genome shotgun sequence
          Length = 3145756

 Score = 58.0 bits (29), Expect = 7e-07
 Identities = 60/69 (86%), Gaps = 1/69 (1%)
 Strand = Plus / Plus

                                                                          
Query: 12     tcacagaccatccccactctggctggcctggaagggtttgaccagagcggatcatgcagt 71
              |||| ||||||| |||| |||||||||||||||||||||  ||| |||||||||||  | 
Sbjct: 407821 tcacggaccatcaccac-ctggctggcctggaagggtttagccacagcggatcatgtggc 407879

                       
Query: 72     gaccagggc 80
              |||||||||
Sbjct: 407880 gaccagggc 407888


  Database: /cursos/BI/genomes/project_2013/Saimiri_boliviensis/genome
  .fa
    Posted date:  Oct 24, 2012  8:25 PM
  Number of letters in database: 2,608,572,064
  Number of sequences in database:  2685
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 113,209
Number of Sequences: 2685
Number of extensions: 113209
Number of successful extensions: 64
Number of sequences better than 1.0e-03: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 62
Number of HSP's gapped (non-prelim): 2
length of query: 96
length of database: 2,608,572,064
effective HSP length: 19
effective length of query: 77
effective length of database: 2,608,521,049
effective search space: 200856120773
effective search space used: 200856120773
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 24 (48.1 bits)