BLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPS00000010_1.0 # SECIS # Selenoprotein H (SelH) # Homo sapiens
# Complete # Forward
         (86 letters)

Database: /cursos/BI/genomes/project_2013/Saimiri_boliviensis/genome.f
a 
           2685 sequences; 2,608,572,064 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|JH378120.1| Saimiri boliviensis boliviensis unplaced genomic ...   149   2e-34
gb|JH378112.1| Saimiri boliviensis boliviensis unplaced genomic ...   149   2e-34
gb|JH378106.1| Saimiri boliviensis boliviensis unplaced genomic ...   141   5e-32
gb|JH378105.1| Saimiri boliviensis boliviensis unplaced genomic ...   141   5e-32
gb|JH378282.1| Saimiri boliviensis boliviensis unplaced genomic ...   117   8e-25

>gb|JH378120.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00016,
                whole genome shotgun sequence
          Length = 32907957

 Score =  149 bits (75), Expect = 2e-34
 Identities = 81/83 (97%)
 Strand = Plus / Minus

                                                                            
Query: 1        tttgtgtccctggtgatgttggaacattaatgatggaacatggccaaacttcagtcatga 60
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 13716381 tttgtgtccctggtgatgttggaacattaatgatggaacatggccaaacttcagtcatgt 13716322

                                       
Query: 61       tcctgaagccatggtttcttccc 83
                 ||||||||||||||||||||||
Sbjct: 13716321 gcctgaagccatggtttcttccc 13716299


>gb|JH378112.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00008,
                whole genome shotgun sequence
          Length = 45331107

 Score =  149 bits (75), Expect = 2e-34
 Identities = 81/83 (97%)
 Strand = Plus / Minus

                                                                            
Query: 1        tttgtgtccctggtgatgttggaacattaatgatggaacatggccaaacttcagtcatga 60
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 43932824 tttgtgtccctggtgatgttggaacattaatgatggaacatggccaaacttcagtcatgc 43932765

                                       
Query: 61       tcctgaagccatggtttcttccc 83
                 ||||||||||||||||||||||
Sbjct: 43932764 gcctgaagccatggtttcttccc 43932742


>gb|JH378106.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00002,
                whole genome shotgun sequence
          Length = 71252344

 Score =  141 bits (71), Expect = 5e-32
 Identities = 80/83 (96%)
 Strand = Plus / Plus

                                                                            
Query: 1        tttgtgtccctggtgatgttggaacattaatgatggaacatggccaaacttcagtcatga 60
                ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| 
Sbjct: 69016578 tttgtgtccctggtgatgttggaacattaatgatggaacatggccaaacgtcagtcatgt 69016637

                                       
Query: 61       tcctgaagccatggtttcttccc 83
                 ||||||||||||||||||||||
Sbjct: 69016638 gcctgaagccatggtttcttccc 69016660


>gb|JH378105.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00001,
                whole genome shotgun sequence
          Length = 72162052

 Score =  141 bits (71), Expect = 5e-32
 Identities = 80/83 (96%)
 Strand = Plus / Plus

                                                                            
Query: 1        tttgtgtccctggtgatgttggaacattaatgatggaacatggccaaacttcagtcatga 60
                ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| 
Sbjct: 51833627 tttgtgtccctggtgatgttggaacattaatgatggaacatggccaaacgtcagtcatgt 51833686

                                       
Query: 61       tcctgaagccatggtttcttccc 83
                 ||||||||||||||||||||||
Sbjct: 51833687 gcctgaagccatggtttcttccc 51833709


>gb|JH378282.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00178,
              whole genome shotgun sequence
          Length = 3135667

 Score =  117 bits (59), Expect = 8e-25
 Identities = 77/83 (92%)
 Strand = Plus / Plus

                                                                          
Query: 1      tttgtgtccctggtgatgttggaacattaatgatggaacatggccaaacttcagtcatga 60
              ||||||||||||||||  ||| ||||||||||||||||||||||||||||||||||||| 
Sbjct: 891674 tttgtgtccctggtgacattgaaacattaatgatggaacatggccaaacttcagtcatgt 891733

                                     
Query: 61     tcctgaagccatggtttcttccc 83
               |||||||||||| |||||||||
Sbjct: 891734 gcctgaagccatgctttcttccc 891756


  Database: /cursos/BI/genomes/project_2013/Saimiri_boliviensis/genome
  .fa
    Posted date:  Oct 24, 2012  8:25 PM
  Number of letters in database: 2,608,572,064
  Number of sequences in database:  2685
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 126,040
Number of Sequences: 2685
Number of extensions: 126040
Number of successful extensions: 54
Number of sequences better than 1.0e-03: 5
Number of HSP's better than  0.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 49
Number of HSP's gapped (non-prelim): 5
length of query: 86
length of database: 2,608,572,064
effective HSP length: 19
effective length of query: 67
effective length of database: 2,608,521,049
effective search space: 174770910283
effective search space used: 174770910283
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 24 (48.1 bits)