BLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPS00000009_1.0 # SECIS # Selenoprotein 15 (Sel15) # Homo
sapiens # Complete # Reverse
         (100 letters)

Database: /cursos/BI/genomes/project_2013/Saimiri_boliviensis/genome.f
a 
           2685 sequences; 2,608,572,064 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|JH378282.1| Saimiri boliviensis boliviensis unplaced genomic ...   165   4e-39
gb|JH378115.1| Saimiri boliviensis boliviensis unplaced genomic ...   123   2e-26

>gb|JH378282.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00178,
               whole genome shotgun sequence
          Length = 3135667

 Score =  165 bits (83), Expect = 4e-39
 Identities = 95/99 (95%)
 Strand = Plus / Minus

                                                                           
Query: 2       ctcaaaaatttgccaagtatgtatctgatccacacaaatccctagaaaggttttctgtgt 61
               |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct: 2873231 ctcaaaaatttgccaagtatttatctgatccacacaaatccttagaaaggttttctgtgt 2873172

                                                      
Query: 62      agtcttcattaacgcaaatctttgtgaatgtttcactct 100
               |||||||||||| ||||||||||| ||||||||||||||
Sbjct: 2873171 agtcttcattaaagcaaatctttgggaatgtttcactct 2873133


>gb|JH378115.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00011,
                whole genome shotgun sequence
          Length = 43820709

 Score =  123 bits (62), Expect = 2e-26
 Identities = 89/98 (90%)
 Strand = Plus / Minus

                                                                            
Query: 1        actcaaaaatttgccaagtatgtatctgatccacacaaatccctagaaaggttttctgtg 60
                ||||||| ||||||||||||| |||| |||||||||| |||| | |||||||||||||||
Sbjct: 25658799 actcaaacatttgccaagtatttatcagatccacacatatccttcgaaaggttttctgtg 25658740

                                                      
Query: 61       tagtcttcattaacgcaaatctttgtgaatgtttcact 98
                |||| ||||||||||||| |||||| ||||||||||||
Sbjct: 25658739 tagttttcattaacgcaagtctttgagaatgtttcact 25658702


  Database: /cursos/BI/genomes/project_2013/Saimiri_boliviensis/genome
  .fa
    Posted date:  Oct 24, 2012  8:25 PM
  Number of letters in database: 2,608,572,064
  Number of sequences in database:  2685
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 162,427
Number of Sequences: 2685
Number of extensions: 162427
Number of successful extensions: 75
Number of sequences better than 1.0e-03: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 73
Number of HSP's gapped (non-prelim): 2
length of query: 100
length of database: 2,608,572,064
effective HSP length: 19
effective length of query: 81
effective length of database: 2,608,521,049
effective search space: 211290204969
effective search space used: 211290204969
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 24 (48.1 bits)